Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g00840	.	Nenu1g00751	Nenu6g01217	Tesi1g00352	.	.	Tesi22g00353	.	.	.	Vivi16g00435	.	.	Nin9g02331	.	.	.	.	.	.	.	.	.	.
Eupl14g00841	.	Nenu1g00749	Nenu6g01215	.	Tesi1g00965	.	Tesi22g00352	Busi12g00656	.	.	.	.	.	.	Nin5g01524	.	.	.	.	.	.	.	.	.
Eupl14g00842	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00843	.	.	Nenu6g01214	.	.	Tesi21g00599	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00844	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00845	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00846	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00847	.	.	.	.	.	.	.	.	.	.	.	.	Nin6g00840	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00848	.	Nenu1g00748	.	.	.	.	Tesi22g00351	.	Busi8g00354	.	.	.	Nin6g00843	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00849	.	.	.	.	.	Tesi21g00600	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

First Previous Page 2460 of 2511 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	30490509	30496329	+	BUSI_023203-RA	Busi12g00656	656
8	4914562	4931455	-	BUSI_015835-RA	Busi8g00354	354
14	11483887	11491349	-	evm.model.CTG_303.172	Eupl14g00840	840
14	11495924	11505197	-	evm.model.CTG_303.173.1	Eupl14g00841	841
14	11509350	11529080	+	evm.model.CTG_303.174	Eupl14g00842	842
14	11544082	11636588	+	evm.model.CTG_303.176	Eupl14g00843	843
14	11640017	11640376	+	evm.model.CTG_303.178	Eupl14g00844	844
14	11640494	11641198	+	evm.model.CTG_303.179	Eupl14g00845	845
14	11645528	11678209	-	evm.model.CTG_303.180	Eupl14g00846	846
14	11688512	11690891	+	evm.model.CTG_303.181	Eupl14g00847	847
14	11693207	11732557	-	evm.model.CTG_303.182	Eupl14g00848	848
14	11741012	11750527	+	evm.model.CTG_303.183	Eupl14g00849	849
1	20786302	20817037	+	OF19782.mRNA1	Nenu1g00748	748
1	20826098	20837294	+	OF19781.mRNA1	Nenu1g00749	749
1	20851320	20852573	+	OF19779.mRNA1	Nenu1g00751	751
6	40421201	40502402	-	OF10930.mRNA1	Nenu6g01214	1214
6	40509732	40514838	+	OF10929.mRNA1	Nenu6g01215	1215
6	40534215	40537143	+	OF10927.mRNA1	Nenu6g01217	1217
5	23620221	23643180	-	NinS14337.t1	Nin5g01524	1524
6	9632512	9652817	+	NinS16293.t1	Nin6g00840	840
6	9668786	9679949	-	NinS16296.t1	Nin6g00843	843
9	35007184	35007953	+	NinS26781.t1	Nin9g02331	2331
1	6864022	6868194	-	Tesin01G0037500.1	Tesi1g00352	352
1	22162064	22176228	+	Tesin01G0101500.1	Tesi1g00965	965
21	12122775	12157467	+	Tesin21G0064900.1	Tesi21g00599	599
21	12166586	12174963	+	Tesin21G0065000.1	Tesi21g00600	600
22	22741800	22774998	+	Tesin22G0038200.1	Tesi22g00351	351
22	22791392	22811226	+	Tesin22G0038300.1	Tesi22g00352	352
22	22812716	22816052	+	Tesin22G0038400.1	Tesi22g00353	353
16	12176866	12181868	+	GSVIVT01018617001	Vivi16g00435	435

DecoBrowse