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Asteraceae Genomic Research Platform

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Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g00850 . . . . . . Tesi22g00350 Busi12g00652 Busi8g00355 Vivi15g00439 . . . . . . Arla11g00182 . . . . . . .
Eupl14g00851 . . . . . Tesi21g00601 Tesi22g00347 . . Vivi15g00438 Vivi16g00432 . . . . . Arla11g00183 . Arla4g00866 Arla3g03390 . . . .
Eupl14g00852 . . . . . . Tesi22g00346 . . . Vivi16g00431 . . . . . . . . . . . . .
Eupl14g00853 . Nenu1g00743 Nenu6g01211 . Tesi1g00964 . . Busi12g00649 . . . . . . Nin5g01527 . . . . . . . . .
Eupl14g00854 . Nenu1g00742 Nenu6g01209 . . Tesi21g00602 . . . . . . Nin6g00864 . . . . . . . . . . .
Eupl14g00855 . Nenu1g00740 Nenu6g01208 Tesi1g00353 . . . . . . . . Nin6g00878 . . . . . . . . . . .
Eupl14g00856 . Nenu1g00739 . . . . Tesi22g00344 . . . . . . . . . . . . . . . . .
Eupl14g00857 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00858 . . . . . . Tesi22g00343 . . . . . . . . . . . . . . . . .
Eupl14g00859 . Nenu1g00736 Nenu6g01206 Tesi1g00354 . Tesi21g00604 Tesi22g00341 Busi12g00647 . . . . Nin6g00880 . . . . . . . . . . .
First Page 2461 of 2511 Last
Gene_GFF
Chromosome Start End Strand Old_gene Gene Num
3 135494792 135497107 - evm.model.000120F.284 Arla3g03390 3390
4 67340698 67343682 + evm.model.000034F.486 Arla4g00866 866
11 4836518 4838550 + evm.model.000192F.14 Arla11g00182 182
11 4971360 4973784 - evm.model.000192F.6 Arla11g00183 183
12 30379391 30388373 - BUSI_023196-RA Busi12g00647 647
12 30430189 30433641 - BUSI_023199-RA Busi12g00649 649
12 30434757 30437374 - BUSI_023201-RA Busi12g00652 652
8 4944301 4947632 - BUSI_015837-RA Busi8g00355 355
14 11751809 11756276 - evm.model.CTG_303.184 Eupl14g00850 850
14 11761986 11763945 + evm.model.CTG_303.185 Eupl14g00851 851
14 11789323 11792138 + evm.model.CTG_303.186 Eupl14g00852 852
14 11802270 11813923 + evm.model.CTG_303.187 Eupl14g00853 853
14 11815992 11818840 - evm.model.CTG_303.188 Eupl14g00854 854
14 11831807 11834282 - evm.model.CTG_303.189 Eupl14g00855 855
14 11843333 11855650 - evm.model.CTG_303.191 Eupl14g00856 856
14 11846593 11846806 - evm.model.CTG_303.190 Eupl14g00857 857
14 11877845 11880379 + evm.model.CTG_303.192 Eupl14g00858 858
14 11903445 11924127 + evm.model.CTG_303.193 Eupl14g00859 859
1 20581474 20589419 - OF19794.mRNA1 Nenu1g00736 736
1 20665120 20668122 + OF19791.mRNA1 Nenu1g00739 739
1 20691987 20692487 + OF19790.mRNA1 Nenu1g00740 740
1 20700549 20702317 + OF19788.mRNA1 Nenu1g00742 742
1 20706173 20712285 - OF19787.mRNA1 Nenu1g00743 743
6 40247029 40279197 - OF10938.mRNA1 Nenu6g01206 1206
6 40329985 40330485 + OF10936.mRNA1 Nenu6g01208 1208
6 40344286 40349448 + OF10935.mRNA1 Nenu6g01209 1209
6 40369082 40374958 - OF10933.mRNA1 Nenu6g01211 1211
5 23732749 23736989 + NinS14340.t1 Nin5g01527 1527
6 9939043 9940427 - NinS16317.t1 Nin6g00864 864
6 10147169 10148473 - NinS16331.t1 Nin6g00878 878
6 10176227 10187209 + NinS16333.t1 Nin6g00880 880
1 6878815 6879312 - Tesin01G0037700.1 Tesi1g00353 353
1 6888466 6901672 + Tesin01G0037800.1 Tesi1g00354 354
1 22062123 22069648 - Tesin01G0101300.1 Tesi1g00964 964
21 12178738 12181848 + Tesin21G0065100.1 Tesi21g00601 601
21 12184696 12187573 - Tesin21G0065200.1 Tesi21g00602 602
21 12291332 12304423 + Tesin21G0065400.1 Tesi21g00604 604
22 22480655 22488911 - Tesin22G0037000.1 Tesi22g00341 341
22 22532529 22539522 - Tesin22G0037200.1 Tesi22g00343 343
22 22558515 22565471 + Tesin22G0037300.1 Tesi22g00344 344
22 22621603 22624506 - Tesin22G0037600.1 Tesi22g00346 346
22 22630641 22633952 + Tesin22G0037800.1 Tesi22g00347 347
22 22709520 22712886 + Tesin22G0038100.1 Tesi22g00350 350
15 14614856 14617208 - GSVIVT01027653001 Vivi15g00438 438
15 14632297 14635061 + GSVIVT01027652001 Vivi15g00439 439
16 12106453 12109166 - GSVIVT01018622001 Vivi16g00431 431
16 12134008 12136119 - GSVIVT01018620001 Vivi16g00432 432
       
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