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Asteraceae Genomic Research Platform

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Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g00860 . . Nenu6g01205 . . . Tesi22g00340 . . . . . . . . . . . . . . . . .
Eupl14g00861 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00862 . Nenu1g00735 Nenu6g01204 Tesi1g00355 . Tesi21g00605 Tesi22g00339 Busi12g00644 Busi8g00357 . . . Nin6g00881 . . . . . . . . . . .
Eupl14g00863 . Nenu1g00734 Nenu6g01203 . Tesi1g00962 . Tesi22g00338 . . Vivi15g00435 . . Nin6g00884 . . . . . . . . . . .
Eupl14g00864 . Nenu1g00731 Nenu6g01202 . Tesi1g00961 . Tesi22g00337 Busi12g00641 Busi8g00360 . Vivi16g00429 . . Nin9g02322 . . . . . Arla3g03385 . . . .
Eupl14g00865 . Nenu1g00730 Nenu4g00255 Tesi1g00356 . Tesi21g00606 Tesi22g00336 Busi12g00640 Busi8g00363 . Vivi16g00428 . . Nin9g02321 . . . . . Arla3g03384 . . . .
Eupl14g00866 . . Nenu6g01196 . . Tesi21g00607 . Busi12g00636 . . . . . . . . . . . . . . . .
Eupl14g00867 . Nenu1g00728 Nenu6g01195 Tesi1g00357 . Tesi21g00608 Tesi22g00335 Busi12g00631 Busi8g00367 . Vivi16g00427 . . Nin9g02318 . . . . Arla4g00868 Arla3g03383 . . . .
Eupl14g00868 . . Nenu6g01194 . . . Tesi22g00334 . . . . . . . . . . . . . . . . .
Eupl14g00869 . . . Tesi1g00358 . Tesi21g00609 Tesi22g00333 . . . . . . . . . . . . . . . . .
First Page 2462 of 2511 Last
Gene_GFF
Chromosome Start End Strand Old_gene Gene Num
3 135318577 135320687 + evm.model.000120F.275 Arla3g03383 3383
3 135358988 135363410 + evm.model.000120F.276 Arla3g03384 3384
3 135388239 135393060 + evm.model.000120F.277 Arla3g03385 3385
4 67398638 67403111 - evm.model.000034F.483 Arla4g00868 868
12 30186207 30189612 + BUSI_023184-RA Busi12g00631 631
12 30191782 30198135 + BUSI_023185-RA Busi12g00636 636
12 30315450 30321735 + BUSI_023190-RA Busi12g00640 640
12 30336852 30340655 + BUSI_023192-RA Busi12g00641 641
12 30362897 30365023 - BUSI_023194-RA Busi12g00644 644
8 4994686 4997860 + BUSI_015842-RA Busi8g00357 357
8 5002691 5006958 - BUSI_015843-RA Busi8g00360 360
8 5024955 5051640 - BUSI_015845-RA Busi8g00363 363
8 5177054 5179888 - BUSI_015854-RA Busi8g00367 367
14 11922716 11936408 - evm.model.CTG_303.194 Eupl14g00860 860
14 11967949 11968388 + evm.model.CTG_303.195 Eupl14g00861 861
14 11983284 11986772 + evm.model.CTG_303.196 Eupl14g00862 862
14 11994001 11996298 - evm.model.CTG_303.197 Eupl14g00863 863
14 12009173 12015032 - evm.model.CTG_303.198 Eupl14g00864 864
14 12027781 12033428 - evm.model.CTG_303.199 Eupl14g00865 865
14 12047472 12062789 - evm.model.CTG_303.200 Eupl14g00866 866
14 12066261 12072240 - evm.model.CTG_303.201 Eupl14g00867 867
14 12087551 12096364 - evm.model.CTG_303.203 Eupl14g00868 868
14 12109730 12111578 + evm.model.CTG_303.204 Eupl14g00869 869
1 20364663 20366982 + OF19802.mRNA1 Nenu1g00728 728
1 20438791 20442724 + OF19800.mRNA1 Nenu1g00730 730
1 20480706 20485132 + OF19799.mRNA1 Nenu1g00731 731
1 20523238 20524692 + OF19796.mRNA1 Nenu1g00734 734
1 20543824 20546098 - OF19795.mRNA1 Nenu1g00735 735
4 6545134 6545466 - OF23514.mRNA1 Nenu4g00255 255
6 39967308 39968207 + OF10950.mRNA1 Nenu6g01194 1194
6 39999530 40001812 + OF10949.mRNA1 Nenu6g01195 1195
6 40009410 40025288 + OF10948.mRNA1 Nenu6g01196 1196
6 40168100 40177453 + OF10942.mRNA1 Nenu6g01202 1202
6 40190763 40192334 + OF10941.mRNA1 Nenu6g01203 1203
6 40211840 40214279 - OF10940.mRNA1 Nenu6g01204 1204
6 40240867 40246805 + OF10939.mRNA1 Nenu6g01205 1205
6 10225889 10231238 + NinS16334.t1 Nin6g00881 881
6 10245005 10247221 - NinS16337.t1 Nin6g00884 884
9 34870585 34875502 + NinS26768.t1 Nin9g02318 2318
9 34895438 34905326 + NinS26771.t1 Nin9g02321 2321
9 34912103 34916260 + NinS26772.t1 Nin9g02322 2322
1 6915379 6918990 + Tesin01G0037900.1 Tesi1g00355 355
1 6923817 6928770 - Tesin01G0038000.1 Tesi1g00356 356
1 6943779 6949463 - Tesin01G0038100.1 Tesi1g00357 357
1 6974465 6976585 + Tesin01G0038200.1 Tesi1g00358 358
1 22021078 22026530 + Tesin01G0101000.1 Tesi1g00961 961
1 22034740 22036185 + Tesin01G0101100.1 Tesi1g00962 962
21 12327106 12329672 + Tesin21G0065500.1 Tesi21g00605 605
21 12339443 12344747 - Tesin21G0065600.1 Tesi21g00606 606
21 12355436 12368055 - Tesin21G0065700.1 Tesi21g00607 607
21 12371944 12377729 - Tesin21G0065800.1 Tesi21g00608 608
21 12406930 12408237 + Tesin21G0066000.1 Tesi21g00609 609
22 22338928 22340271 - Tesin22G0036100.1 Tesi22g00333 333
22 22348502 22349257 + Tesin22G0036200.1 Tesi22g00334 334
22 22376274 22382485 + Tesin22G0036400.1 Tesi22g00335 335
22 22402051 22409289 + Tesin22G0036500.1 Tesi22g00336 336
22 22426504 22431462 + Tesin22G0036600.1 Tesi22g00337 337
22 22440142 22441611 + Tesin22G0036700.1 Tesi22g00338 338
22 22453217 22455751 - Tesin22G0036800.1 Tesi22g00339 339
22 22474676 22480531 + Tesin22G0036900.1 Tesi22g00340 340
15 14555852 14559875 + GSVIVT01027658001 Vivi15g00435 435
16 12003325 12005697 + GSVIVT01018628001 Vivi16g00427 427
16 12049723 12054218 + GSVIVT01018625001 Vivi16g00428 428
16 12077244 12082552 + GSVIVT01018624001 Vivi16g00429 429
       
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