Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl1g00031	Eupl5g00061	.	.	.	.	.	.	.	.	.	Vivi6g00892	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00032	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00033	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00034	Eupl5g00062	.	.	.	.	.	.	.	.	Vivi8g00490	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00035	Eupl5g00065	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00036	Eupl5g00071	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00037	Eupl5g00072	.	.	.	.	.	.	.	.	.	.	Vivi13g00853	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00038	Eupl5g00074	.	.	Tesi7g01039	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00039	.	Nenu2g04023	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00040	Eupl5g00075	Nenu2g04023	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

First Previous Page 4 of 2511 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	1080448	1083981	+	evm.model.CTG_111.34	Eupl1g00031	31
1	1089608	1127230	+	evm.model.CTG_111.35	Eupl1g00032	32
1	1144320	1148421	-	evm.model.CTG_111.37.1	Eupl1g00033	33
1	1180497	1187655	-	evm.model.CTG_111.38	Eupl1g00034	34
1	1204278	1209201	-	evm.model.CTG_111.40	Eupl1g00035	35
1	1220163	1232938	+	evm.model.CTG_111.41	Eupl1g00036	36
1	1243462	1278966	-	evm.model.CTG_111.42.1	Eupl1g00037	37
1	1318267	1321178	-	evm.model.CTG_111.43	Eupl1g00038	38
1	1333419	1352103	+	evm.model.CTG_111.44	Eupl1g00039	39
1	1356089	1361208	-	evm.model.CTG_111.45.3	Eupl1g00040	40
5	1298706	1299825	+	evm.model.CTG_219.149	Eupl5g00061	61
5	1324215	1330041	-	evm.model.CTG_219.147	Eupl5g00062	62
5	1351057	1369637	-	evm.model.CTG_219.144	Eupl5g00065	65
5	1489858	1492734	+	evm.model.CTG_219.137	Eupl5g00071	71
5	1521125	1524906	-	evm.model.CTG_219.136	Eupl5g00072	72
5	1548485	1553596	-	evm.model.CTG_219.134	Eupl5g00074	74
5	1583201	1588041	-	evm.model.CTG_219.133.6	Eupl5g00075	75
2	108634077	108637152	-	OF23192.mRNA1	Nenu2g04023	4023
7	24061097	24064338	-	Tesin07G0109300.1	Tesi7g01039	1039
6	13571881	13574074	-	GSVIVT01037448001	Vivi6g00892	892
8	11925225	11928422	-	GSVIVT01025781001	Vivi8g00490	490
13	15946708	15949564	+	GSVIVT01027355001	Vivi13g00853	853

DecoBrowse