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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00241 Cobi2g02345 Bial10g01370 Bial22g00964 Dapi4g01911 Dapi20g01859 Hetu1g00216 . Hetu3g00206 Amtr12g00560 Smso1g03672 . . . . . . . Stre1g04398 Mimi16g02156 . . . . . . . . . . . . . . . . . . . .
Hean1g00242 Cobi2g02346 Bial10g01371 Bial22g00965 Dapi4g01913 Dapi20g01860 Hetu1g00217 . Hetu3g00207 Amtr12g00562 Smso1g03673 Smso28g00445 . Fro14g01346 . . Fra18g01499 Fli3g00689 Stre1g04399 Mimi16g02159 Hean11g02674 Cobi6g00996 Bial12g02771 Bial24g02615 Dapi4g01913 Dapi31g02105 Hetu32g02289 Hetu31g02259 Hetu33g02217 Amtr07g06220 . Smso20g01736 Taer4g00757 Fro13g01376 Fso12g01927 Ftr6g02340 Fra13g01404 Fli9g01426 Stre1g04399 Mimi16g00539
Hean1g00243 Cobi2g02347 Bial10g01372 Bial22g00966 Dapi4g01914 Dapi20g01861 Hetu1g00218 . Hetu3g00208 Amtr12g00564 Smso1g03674 . . Fro14g01347 Fso1g02207 Ftr2g00610 Fra18g01500 Fli3g00688 Stre1g04400 Mimi16g02160 Hean11g02676 Cobi6g00995 Bial12g02772 Bial24g02616 Dapi4g01914 Dapi31g02106 Hetu32g02290 Hetu31g02260 Hetu33g02218 Amtr07g06219 . Smso20g01737 Taer4g02469 Fro13g01377 Fso12g01928 Ftr6g02341 Fra13g01403 Fli9g01427 Stre1g04400 Mimi16g02160
Hean1g00244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 131859507 131864525 + AtrifAMIRv0_Chr07g0513661 Amtr07g06219 6219
7 131865505 131868778 - AtrifAMIRv0_Chr07g0513671 Amtr07g06220 6220
12 17466361 17471635 - AtrifAMIRv0_Chr12g0722921 Amtr12g00560 560
12 17512732 17515752 + AtrifAMIRv0_Chr12g0722941 Amtr12g00562 562
12 17534555 17539375 - AtrifAMIRv0_Chr12g0722961 Amtr12g00564 564
10 13699504 13704973 - g86799.t1 Bial10g01370 1370
10 13706979 13709009 + g86798.t1 Bial10g01371 1371
10 13709693 13713745 - g86797.t1 Bial10g01372 1372
12 57769175 57770733 + g35970.t1 Bial12g02771 2771
12 57772377 57777618 - g35971.t1 Bial12g02772 2772
22 9271915 9276384 - g147070.t1 Bial22g00964 964
22 9289618 9292231 + g147069.t1 Bial22g00965 965
22 9292844 9296638 - g147068.t1 Bial22g00966 966
24 56878811 56881929 + g68281.t1 Bial24g02615 2615
24 56888641 56898120 - g68282.t1 Bial24g02616 2616
2 71392055 71394837 - h2tg000016l_1.g4901.t1 Cobi2g02345 2345
2 71399291 71401905 + h2tg000016l_1.g4900.t1 Cobi2g02346 2346
2 71402689 71406175 - h2tg000016l_1.g4899.t1 Cobi2g02347 2347
6 8002907 8007686 + h2tg000031l_1.g19308.t1 Cobi6g00995 995
6 8009251 8012912 - h2tg000031l_1.g19309.t1 Cobi6g00996 996
4 117737520 117741970 - h1tg000193l.g132825.t1 Dapi4g01911 1911
4 117771932 117774943 + h1tg000193l.g132823.t1 Dapi4g01913 1913
4 117775669 117780004 - h1tg000193l.g132822.t1 Dapi4g01914 1914
20 109549412 109557067 - h1tg000169l.g129538.t1 Dapi20g01859 1859
20 109590876 109593923 + h1tg000169l.g129537.t1 Dapi20g01860 1860
20 109594645 109599321 - h1tg000169l.g129536.t1 Dapi20g01861 1861
31 103578415 103585240 + h2tg000063l.g12190.t1 Dapi31g02105 2105
31 103586519 103592975 - h2tg000063l.g12191.t1 Dapi31g02106 2106
3 18495857 18501023 + FliAMIRv0_Chr03g0079571 Fli3g00688 688
3 18504834 18513853 - FliAMIRv0_Chr03g0079581 Fli3g00689 689
9 72110345 72117526 + FliAMIRv0_Chr09g0221921 Fli9g01426 1426
9 72120095 72147366 - FliAMIRv0_Chr09g0221931 Fli9g01427 1427
13 42306084 42310511 + FraAMIRv0_Chr13g0267111 Fra13g01403 1403
13 42312177 42316363 - FraAMIRv0_Chr13g0267121 Fra13g01404 1404
18 59740925 59744660 + FraAMIRv0_Chr18g0356961 Fra18g01499 1499
18 59746477 59752615 - FraAMIRv0_Chr18g0356971 Fra18g01500 1500
13 23188180 23191891 + FroAMIRv0_Chr13g0235581 Fro13g01376 1376
13 23194496 23205471 - FroAMIRv0_Chr13g0235591 Fro13g01377 1377
14 21358463 21362005 + FroAMIRv0_Chr14g0255001 Fro14g01346 1346
14 21364205 21370719 - FroAMIRv0_Chr14g0255011 Fro14g01347 1347
1 62799639 62806241 - FsoAMIRv0_Chr01g0022061 Fso1g02207 2207
12 57766388 57770632 + FsoAMIRv0_Chr12g0308911 Fso12g01927 1927
12 57773251 57782791 - FsoAMIRv0_Chr12g0308921 Fso12g01928 1928
2 10998028 11004737 + FtrAMIRv0_Chr02g0034771 Ftr2g00610 610
6 90291125 90295324 + FtrAMIRv0_Chr06g0184881 Ftr6g02340 2340
6 90296452 90301024 - FtrAMIRv0_Chr06g0184891 Ftr6g02341 2341
1 6296638 6303681 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002771 Hean1g00241 241
1 6305558 6309943 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002781 Hean1g00242 242
1 6307359 6316088 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002791 Hean1g00243 243
1 6366062 6367806 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002801 Hean1g00244 244
1 6368301 6369508 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002811 Hean1g00245 245
1 6369530 6369874 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002821 Hean1g00246 246
1 6369965 6371785 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002831 Hean1g00247 247
1 6371807 6372151 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002841 Hean1g00248 248
1 6372242 6374046 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002851 Hean1g00249 249
1 6374068 6374412 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002861 Hean1g00250 250
11 122431351 122436481 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0497921 Hean11g02674 2674
11 122439381 122445821 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0497941 Hean11g02676 2676
1 8477308 8482745 - >Htub.h1tg003050l.g485.t1 Hetu1g00216 216
1 8486116 8489949 + >Htub.h1tg003050l.g486.t1 Hetu1g00217 217
1 8490528 8496530 - >Htub.h1tg003050l.g487.t1 Hetu1g00218 218
3 8471783 8476189 - >Htub.h1tg000727l.g108.t1 Hetu3g00206 206
3 8478917 8482522 + >Htub.h1tg000727l.g109.t1 Hetu3g00207 207
3 8483175 8490956 - >Htub.h1tg000727l.g110.t1 Hetu3g00208 208
31 131756976 131762384 + >Htub.h1tg000896l.g468.t1 Hetu31g02259 2259
31 131766294 131772164 - >Htub.h1tg000896l.g469.t1 Hetu31g02260 2260
32 133889389 133894401 + >Htub.h1tg001196l.g158.t1 Hetu32g02289 2289
32 133897407 133903221 - >Htub.h1tg001196l.g157.t1 Hetu32g02290 2290
33 125787678 125792643 + >Htub.h1tg000866l.g337.t1 Hetu33g02217 2217
33 125795888 125801719 - >Htub.h1tg000866l.g336.t1 Hetu33g02218 2218
16 17462462 17473262 - KAD3336609.1 Mimi16g00539 539
16 84281802 84293753 - KAD3338226.1 Mimi16g02156 2156
16 84389334 84393779 + KAD3338229.1 Mimi16g02159 2159
16 84397328 84408967 - KAD3338230.1 Mimi16g02160 2160
1 122548542 122556198 - KAI3829635.1 Smso1g03672 3672
1 122571893 122575905 + KAI3829636.1 Smso1g03673 3673
1 122578910 122584303 - KAI3829637.1 Smso1g03674 3674
20 58612991 58618966 + KAI3742732.1 Smso20g01736 1736
20 58620433 58630535 - KAI3742733.1 Smso20g01737 1737
28 11896645 11900497 - KAI3682725.1 Smso28g00445 445
1 130545568 130549909 - Streb.1G043980.1 Stre1g04398 4398
1 130594472 130599022 + Streb.1G043990.1 Stre1g04399 4399
1 130599695 130605459 - Streb.1G044000.1 Stre1g04400 4400
4 5737368 5740894 - >KAK1426689.1 Taer4g00757 757
4 55172983 55176917 + >KAK1428249.1 Taer4g02469 2469
       
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