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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl1g00151 . . Nenu7g00936 . Tesi11g01026 . None Busi1g00106 . . . . . . . . . . . . . . . .
Eupl1g00152 . . Nenu7g00935 . Tesi11g01027 . None Busi1g00105 . . . . . . Nin8g02239 . . . . . . . . .
Eupl1g00153 . . . . . . None . . . . . . . . . . . . . . . . .
Eupl1g00154 . . . . . . None . . . . . . . . . . . . . . . . .
Eupl1g00155 . . . . . . None . . . . . . . . . . . . . . . . .
Eupl1g00156 . Nenu2g03095 Nenu7g00933 . Tesi11g01033 . None Busi1g00089 . . . . . . . . . . . . . . . .
Eupl1g00157 Eupl5g00251 Nenu2g03098 Nenu7g00081 . . . None Busi1g00067 Busi2g00750 . Vivi6g00117 . Nin7g01316 . . . . . Arla3g02332 . . . . .
Eupl1g00158 Eupl5g00252 Nenu2g03099 Nenu7g00909 . . . None Busi1g00065 . . . . . . . . . . . . . . . .
Eupl1g00159 Eupl5g00253 . Nenu7g00908 . . . None . . . . . . . . . . . . . . . . .
Eupl1g00160 Eupl5g00254 Nenu2g03100 Nenu7g00906 . Tesi11g01051 . None Busi1g00062 . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
3 112237530 112255246 + evm.model.000063F.92 Arla3g02332 2332
1 2307750 2312288 - BUSI_000061-RA Busi1g00062 62
1 2390474 2391070 + BUSI_000065-RA Busi1g00065 65
1 2395676 2396629 - BUSI_000066-RA Busi1g00067 67
1 3116455 3124998 + BUSI_000088-RA Busi1g00089 89
1 3893524 3894447 + BUSI_000105-RA Busi1g00105 105
1 3930888 3931166 - BUSI_000106-RA Busi1g00106 106
2 23318364 23320001 - BUSI_003600-RA Busi2g00750 750
1 5046437 5072653 + evm.model.CTG_212.125.1 Eupl1g00151 151
1 5079237 5081052 - evm.model.CTG_212.126 Eupl1g00152 152
1 5108194 5108895 - evm.model.CTG_212.127 Eupl1g00153 153
1 5127235 5146998 + evm.model.CTG_212.128 Eupl1g00154 154
1 5150534 5159220 - evm.model.CTG_212.129 Eupl1g00155 155
1 5173723 5179828 + evm.model.CTG_212.130 Eupl1g00156 156
1 5193377 5195858 + evm.model.CTG_212.131 Eupl1g00157 157
1 5201329 5207952 - evm.model.CTG_212.132 Eupl1g00158 158
1 5211018 5250538 - evm.model.CTG_212.133 Eupl1g00159 159
1 5268779 5279339 + evm.model.CTG_212.134 Eupl1g00160 160
5 6922784 6925208 + evm.model.CTG_448.33 Eupl5g00251 251
5 6925994 6941339 - evm.model.CTG_448.34 Eupl5g00252 252
5 6962162 6975536 - evm.model.CTG_448.36 Eupl5g00253 253
5 7010885 7019383 + evm.model.CTG_448.37 Eupl5g00254 254
2 72842754 72851453 - OF24507.mRNA1 Nenu2g03095 3095
2 72987206 72988066 + OF24510.mRNA1 Nenu2g03098 3098
2 73017410 73022031 - OF24511.mRNA1 Nenu2g03099 3099
2 73084685 73102125 + OF24512.mRNA1 Nenu2g03100 3100
7 1543399 1544052 + OF12232.mRNA1 Nenu7g00081 81
7 19693383 19721606 - OF20896.mRNA1 Nenu7g00906 906
7 19829099 19844559 + OF20898.mRNA1 Nenu7g00908 908
7 19855904 19860285 + OF20899.mRNA1 Nenu7g00909 909
7 20238173 20248415 - OF20923.mRNA1 Nenu7g00933 933
7 20319682 20320332 + OF20925.mRNA1 Nenu7g00935 935
7 20341136 20353593 - OF20926.mRNA1 Nenu7g00936 936
7 29047117 29053356 - NinS19779.t1 Nin7g01316 1316
8 31258803 31270316 - NinS23671.t1 Nin8g02239 2239
11 24528883 24546184 + Tesin11G0106700.1 Tesi11g01026 1026
11 24565219 24565860 - Tesin11G0106800.1 Tesi11g01027 1027
11 24722692 24730814 - Tesin11G0107400.1 Tesi11g01033 1033
11 25407093 25415006 + Tesin11G0109300.1 Tesi11g01051 1051
6 1350308 1408792 + GSVIVT01025370001 Vivi6g00117 117
       
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