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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00522 . Bial10g01092 . Dapi4g01552 Dapi20g01454 Hetu1g01730 Hetu2g01541 Hetu3g01574 . Smso1g03341 Smso28g00639 . . . . . . Stre1g04081 Mimi16g01821 . . . . . . . . . . . . . . . . . . . .
Hean1g00523 . Bial10g01093 . Dapi4g01553 Dapi20g01455 Hetu1g01729 Hetu2g01540 Hetu3g01573 Amtr02g09038 Smso1g03342 Smso28g00638 . . . . . . Stre1g04082 Mimi16g01822 . . . . . . . . . . . . . . . . . . . .
Hean1g00524 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00525 Cobi2g02021 Bial10g01094 . Dapi4g01554 Dapi20g01457 Hetu1g01726 . Hetu3g01571 Amtr02g09042 Smso1g03343 Smso28g00636 . . . . . . Stre1g04083 Mimi16g01823 . . . . . . . . . . . . . . . . . . . .
Hean1g00526 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00527 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00528 . Bial10g01096 . Dapi4g01555 Dapi20g01459 Hetu1g01725 . Hetu3g01570 Amtr02g09044 Smso1g03344 Smso28g00635 . . . . . . Stre1g04084 Mimi16g01824 . . . . . . . . . . . . . . . . . . . .
Hean1g00529 Cobi2g02031 . . . . . . . . Smso1g03361 Smso28g00629 . Fro14g00996 Fso1g01509 . Fra18g01363 Fli3g01134 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 176858475 176865092 - AtrifAMIRv0_Chr02g0186341 Amtr02g09038 9038
2 176947376 176948815 + AtrifAMIRv0_Chr02g0186381 Amtr02g09042 9042
2 176963080 176969251 - AtrifAMIRv0_Chr02g0186401 Amtr02g09044 9044
10 11027168 11033874 - g87077.t1 Bial10g01092 1092
10 11035064 11038374 - g87076.t1 Bial10g01093 1093
10 11040978 11044325 + g87075.t1 Bial10g01094 1094
10 11046552 11051602 - g87073.t1 Bial10g01096 1096
2 62491735 62495666 - h2tg000016l_1.g5225.t1 Cobi2g02021 2021
2 63025036 63029081 + h2tg000016l_1.g5215.t1 Cobi2g02031 2031
4 91697274 91704159 - h2tg000160l.g57137.t1 Dapi4g01552 1552
4 91704992 91712115 - h2tg000160l.g57138.t1 Dapi4g01553 1553
4 92026025 92030971 + h2tg000160l.g57139.t1 Dapi4g01554 1554
4 92255427 92261246 - h2tg000160l.g57140.t1 Dapi4g01555 1555
20 83340394 83346615 - h2tg000075l.g16824.t1 Dapi20g01454 1454
20 83347435 83356377 - h2tg000075l.g16825.t1 Dapi20g01455 1455
20 83621973 83626095 + h2tg000075l.g16827.t1 Dapi20g01457 1457
20 83740887 83746810 - h2tg000075l.g16829.t1 Dapi20g01459 1459
3 42123196 42126948 - FliAMIRv0_Chr03g0084031 Fli3g01134 1134
18 48960947 48964730 + FraAMIRv0_Chr18g0355601 Fra18g01363 1363
14 15071669 15075424 + FroAMIRv0_Chr14g0251501 Fro14g00996 996
1 40359979 40361854 + FsoAMIRv0_Chr01g0015081 Fso1g01509 1509
1 20907045 20907865 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005841 Hean1g00521 521
1 21051391 21060776 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005851 Hean1g00522 522
1 21061442 21062657 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005861 Hean1g00523 523
1 21083702 21084725 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005871 Hean1g00524 524
1 21392242 21401194 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005881 Hean1g00525 525
1 21444488 21445204 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005891 Hean1g00526 526
1 21451281 21451703 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005901 Hean1g00527 527
1 21638213 21649424 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005911 Hean1g00528 528
1 22328774 22333732 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005921 Hean1g00529 529
1 22398143 22404552 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005931 Hean1g00530 530
1 96204741 96210271 + >Htub.h1tg001760l.g38.t1 Hetu1g01725 1725
1 96408223 96410157 - >Htub.h1tg001760l.g39.t1 Hetu1g01726 1726
1 96744732 96748424 + >Htub.h1tg001760l.g43.t1 Hetu1g01729 1729
1 96749047 96758208 + >Htub.h1tg001760l.g44.t1 Hetu1g01730 1730
2 88012479 88014861 + >Htub.h1tg000510l.g92.t1 Hetu2g01540 1540
2 88016434 88024019 + >Htub.h1tg000510l.g91.t1 Hetu2g01541 1541
3 89962857 89969961 + >Htub.h1tg000657l.g328.t1 Hetu3g01570 1570
3 90003515 90012012 - >Htub.h1tg000657l.g329.t1 Hetu3g01571 1571
3 90703710 90706093 + >Htub.h1tg000657l.g331.t1 Hetu3g01573 1573
3 90707688 90715265 + >Htub.h1tg000657l.g332.t1 Hetu3g01574 1574
16 77972031 77983051 - KAD3337891.1 Mimi16g01821 1821
16 77984106 77991598 - KAD3337892.1 Mimi16g01822 1822
16 78008213 78017949 + KAD3337893.1 Mimi16g01823 1823
16 78023131 78029432 - KAD3337894.1 Mimi16g01824 1824
1 115182419 115193716 - KAI3829304.1 Smso1g03341 3341
1 115194622 115205973 - KAI3829305.1 Smso1g03342 3342
1 115212555 115216005 + KAI3829306.1 Smso1g03343 3343
1 115226231 115234358 - KAI3829307.1 Smso1g03344 3344
1 115551674 115556136 + KAI3829324.1 Smso1g03361 3361
28 23977044 23981908 - KAI3682909.1 Smso28g00629 629
28 24811715 24814379 + KAI3682915.1 Smso28g00635 635
28 24824998 24830009 - KAI3682916.1 Smso28g00636 636
28 24923980 24955836 + KAI3682918.1 Smso28g00638 638
28 24956526 24963278 + KAI3682919.1 Smso28g00639 639
1 125732970 125739730 - Streb.1G040810.1 Stre1g04081 4081
1 125740307 125744249 - Streb.1G040820.1 Stre1g04082 4082
1 125747826 125751120 + Streb.1G040830.1 Stre1g04083 4083
1 125751526 125757085 - Streb.1G040840.1 Stre1g04084 4084
       
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