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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00511 Cobi2g02018 Bial10g01086 . Dapi4g01536 Dapi20g01443 Hetu1g01743 . Hetu3g01584 Amtr02g09010 . Smso28g00642 . . . . . . Stre1g04078 Mimi16g01817 . . . . . . . . . . . . . . . . . . . .
Hean1g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00513 . Bial10g01089 . Dapi4g01538 Dapi20g01444 Hetu1g01742 Hetu2g01551 Hetu3g01583 Amtr02g09014 Smso1g03337 Smso28g00641 . . . . . . Stre1g04079 Mimi16g01818 . . . . . . . . . . . . . . . . . . . .
Hean1g00514 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00517 . Bial10g01090 . Dapi4g01539 Dapi20g01445 Hetu1g01740 Hetu2g01550 Hetu3g01581 Amtr02g09029 Smso1g03338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00519 . Bial10g01091 . Dapi4g01540 Dapi20g01447 Hetu1g01739 Hetu2g01549 Hetu3g01579 Amtr02g09030 Smso1g03339 . . . . . . . Stre1g04080 Mimi16g01820 . . . . . . . . . . . . . . . . . . . .
Hean1g00520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 176171567 176173661 - AtrifAMIRv0_Chr02g0186061 Amtr02g09010 9010
2 176260346 176268414 + AtrifAMIRv0_Chr02g0186101 Amtr02g09014 9014
2 176717291 176719156 - AtrifAMIRv0_Chr02g0186251 Amtr02g09029 9029
2 176743845 176746989 - AtrifAMIRv0_Chr02g0186261 Amtr02g09030 9030
10 10988136 10990519 - g87083.t1 Bial10g01086 1086
10 11000642 11005867 + g87080.t1 Bial10g01089 1089
10 11007472 11008862 - g87079.t1 Bial10g01090 1090
10 11010395 11013269 - g87078.t1 Bial10g01091 1091
2 62152311 62156605 + h2tg000016l_1.g5228.t1 Cobi2g02018 2018
4 90983309 90986270 - h2tg000160l.g57121.t1 Dapi4g01536 1536
4 91077483 91087833 + h2tg000160l.g57123.t1 Dapi4g01538 1538
4 91088891 91090048 - h2tg000160l.g57124.t1 Dapi4g01539 1539
4 91188297 91190310 - h2tg000160l.g57125.t1 Dapi4g01540 1540
20 82438046 82441032 - h2tg000075l.g16813.t1 Dapi20g01443 1443
20 82553583 82559770 + h2tg000075l.g16814.t1 Dapi20g01444 1444
20 82560833 82561990 - h2tg000075l.g16815.t1 Dapi20g01445 1445
20 82771340 82773354 - h2tg000075l.g16817.t1 Dapi20g01447 1447
1 20407217 20410749 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005741 Hean1g00511 511
1 20432257 20432895 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005751 Hean1g00512 512
1 20523345 20531279 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005761 Hean1g00513 513
1 20524563 20524825 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005771 Hean1g00514 514
1 20537821 20538108 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005781 Hean1g00515 515
1 20612868 20613476 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005791 Hean1g00516 516
1 20613383 20614657 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005801 Hean1g00517 517
1 20722074 20723219 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005811 Hean1g00518 518
1 20881258 20884605 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005821 Hean1g00519 519
1 20902026 20907875 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0005831 Hean1g00520 520
1 98152349 98154344 + >Htub.h1tg001760l.g54.t1 Hetu1g01739 1739
1 98292337 98293417 + >Htub.h1tg001760l.g55.t1 Hetu1g01740 1740
1 98411572 98414410 - >Htub.h1tg001760l.g57.t1 Hetu1g01742 1742
1 98613089 98617156 + >Htub.h1tg001760l.g58.t1 Hetu1g01743 1743
2 88717971 88719847 + >Htub.h1tg000510l.g83.t1 Hetu2g01549 1549
2 88756820 88758367 + >Htub.h1tg000510l.g82.t1 Hetu2g01550 1550
2 88794729 88801402 - >Htub.h1tg000510l.g81.t1 Hetu2g01551 1551
3 91485760 91487636 + >Htub.h1tg000657l.g337.t1 Hetu3g01579 1579
3 91514358 91515893 + >Htub.h1tg000657l.g339.t1 Hetu3g01581 1581
3 91563834 91565014 - >Htub.h1tg000657l.g341.t1 Hetu3g01583 1583
3 91983533 91986538 + >Htub.h1tg000657l.g342.t1 Hetu3g01584 1584
16 77919319 77921941 + KAD3337887.1 Mimi16g01817 1817
16 77925204 77936445 + KAD3337888.1 Mimi16g01818 1818
16 77956921 77959697 - KAD3337890.1 Mimi16g01820 1820
1 115112060 115118755 + KAI3829300.1 Smso1g03337 3337
1 115125137 115126626 - KAI3829301.1 Smso1g03338 3338
1 115157086 115159751 - KAI3829302.1 Smso1g03339 3339
28 25748542 25762985 - KAI3682921.1 Smso28g00641 641
28 25996135 26016579 - KAI3682922.1 Smso28g00642 642
1 125673418 125676876 + Streb.1G040780.1 Stre1g04078 4078
1 125677450 125682442 + Streb.1G040790.1 Stre1g04079 4079
1 125683184 125685430 - Streb.1G040800.1 Stre1g04080 4080
       
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