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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00361 Cobi2g02458 Bial10g01452 . Dapi4g02010 . Hetu1g00351 Hetu2g00313 Hetu3g00319 Amtr12g00919 Smso1g03764 . Taer4g02596 Fro14g01415 . Ftr2g00495 Fra18g01570 Fli3g00585 Stre1g04485 Mimi16g02233 . . . . . . . . . . . . . . . . . . . .
Hean1g00362 Cobi2g02460 Bial10g01453 . Dapi4g02011 . Hetu1g00353 Hetu2g00314 Hetu3g00320 Amtr12g00920 . Smso28g00389 Taer4g02597 Fro14g01416 Fso1g02299 . Fra18g01571 Fli3g00583 Stre1g04487 Mimi16g02234 . . . . . . . . . . . . . . . . . . . .
Hean1g00363 Cobi2g02461 Bial10g01454 . Dapi4g02012 . Hetu1g00354 Hetu2g00315 Hetu3g00321 Amtr12g00921 Smso1g03765 Smso28g00388 . . . . . . Stre1g04488 Mimi16g02235 Hean11g02471 . Bial12g02664 Bial24g02505 . Dapi31g01996 Hetu32g02094 Hetu31g02083 . . . . . . . . . . . .
Hean1g00364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00365 . . . Dapi4g02013 . Hetu1g00355 Hetu2g00316 Hetu3g00322 Amtr12g00922 Smso1g03766 . Taer4g02599 Fro14g01418 Fso1g02301 Ftr2g00492 Fra18g01573 Fli3g00582 Stre1g04489 Mimi16g02236 . . . . . . . . . . . . . . . . . . . .
Hean1g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00367 . . . . . Hetu1g00356 . Hetu3g00323 . Smso1g03767 . . Fro14g01419 . Ftr2g00491 Fra18g01574 Fli3g00581 Stre1g04490 Mimi16g02238 . . . . . . . . . . . . . . . . . . . .
Hean1g00368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00369 . Bial10g02045 . . . Hetu1g00358 Hetu2g00319 Hetu3g00327 Amtr12g00924 Smso1g03768 Smso28g00679 . . . . . . Stre1g04491 Mimi16g02239 Hean11g02469 . Bial12g02665 Bial24g02506 . Dapi31g01995 Hetu32g02085 Hetu31g02080 . Amtr07g04484 . Smso20g01642 . . . . . . . .
Hean1g00370 Cobi2g02462 Bial10g01458 Bial22g01584 . . Hetu1g01916 . Hetu3g00333 . Smso1g03772 . Taer4g02602 Fro14g01421 Fso1g02302 . Fra18g01576 Fli3g00579 Stre1g04493 Mimi16g02248 . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 93672835 93673434 + AtrifAMIRv0_Chr07g0496311 Amtr07g04484 4484
12 24993258 24994186 - AtrifAMIRv0_Chr12g0726511 Amtr12g00919 919
12 25034534 25040138 + AtrifAMIRv0_Chr12g0726521 Amtr12g00920 920
12 25041229 25041759 - AtrifAMIRv0_Chr12g0726531 Amtr12g00921 921
12 25048757 25051475 + AtrifAMIRv0_Chr12g0726541 Amtr12g00922 922
12 25075625 25076047 - AtrifAMIRv0_Chr12g0726561 Amtr12g00924 924
10 14680354 14681426 - g86717.t1 Bial10g01452 1452
10 14736495 14742350 + g86716.t1 Bial10g01453 1453
10 14742880 14743425 - g86715.t1 Bial10g01454 1454
10 14796674 14800030 + g86711.t1 Bial10g01458 1458
10 21898147 21900719 - g86124.t1 Bial10g02045 2045
12 56884372 56884896 - g35863.t1 Bial12g02664 2664
12 56893643 56894101 - g35864.t1 Bial12g02665 2665
22 17007272 17009844 - g112779.t1 Bial22g01584 1584
24 55904217 55904741 - g68171.t1 Bial24g02505 2505
24 55913774 55914232 - g68172.t1 Bial24g02506 2506
2 73731568 73732117 - h2tg000016l_1.g4788.t1 Cobi2g02458 2458
2 73823297 73828575 + h2tg000016l_1.g4786.t1 Cobi2g02460 2460
2 73828955 73829494 - h2tg000016l_1.g4785.t1 Cobi2g02461 2461
2 73870861 73872582 + h2tg000016l_1.g4784.t1 Cobi2g02462 2462
4 121387625 121388427 - h1tg000121l.g120106.t1 Dapi4g02010 2010
4 121485402 121492598 + h1tg000121l.g120105.t1 Dapi4g02011 2011
4 121493981 121494520 - h1tg000121l.g120104.t1 Dapi4g02012 2012
4 121503475 121507326 + h1tg000121l.g120103.t1 Dapi4g02013 2013
31 98427097 98427615 + h2tg000063l.g12080.t1 Dapi31g01995 1995
31 98474763 98475290 + h2tg000063l.g12081.t1 Dapi31g01996 1996
3 14426625 14428535 - FliAMIRv0_Chr03g0078481 Fli3g00579 579
3 14568405 14570203 - FliAMIRv0_Chr03g0078501 Fli3g00581 581
3 14578469 14582019 - FliAMIRv0_Chr03g0078511 Fli3g00582 582
3 14591292 14594516 - FliAMIRv0_Chr03g0078521 Fli3g00583 583
3 14724459 14724963 + FliAMIRv0_Chr03g0078541 Fli3g00585 585
18 61016735 61017239 - FraAMIRv0_Chr18g0357671 Fra18g01570 1570
18 61038249 61044563 + FraAMIRv0_Chr18g0357681 Fra18g01571 1571
18 61048987 61051796 + FraAMIRv0_Chr18g0357701 Fra18g01573 1573
18 61057029 61058766 + FraAMIRv0_Chr18g0357711 Fra18g01574 1574
18 61147172 61149109 + FraAMIRv0_Chr18g0357731 Fra18g01576 1576
14 22452019 22452523 - FroAMIRv0_Chr14g0255691 Fro14g01415 1415
14 22480810 22486836 + FroAMIRv0_Chr14g0255701 Fro14g01416 1416
14 22493717 22497063 + FroAMIRv0_Chr14g0255721 Fro14g01418 1418
14 22502098 22503914 + FroAMIRv0_Chr14g0255731 Fro14g01419 1419
14 22536805 22538712 + FroAMIRv0_Chr14g0255751 Fro14g01421 1421
1 64724503 64730890 + FsoAMIRv0_Chr01g0022981 Fso1g02299 2299
1 64736719 64740923 + FsoAMIRv0_Chr01g0023001 Fso1g02301 2301
1 64804577 64805377 + FsoAMIRv0_Chr01g0023011 Fso1g02302 2302
2 7953124 7954781 - FtrAMIRv0_Chr02g0033581 Ftr2g00491 491
2 7962403 7966026 - FtrAMIRv0_Chr02g0033591 Ftr2g00492 492
2 8006745 8007249 + FtrAMIRv0_Chr02g0033621 Ftr2g00495 495
1 10117572 10118790 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004041 Hean1g00361 361
1 10361392 10368366 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004051 Hean1g00362 362
1 10368984 10369523 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004061 Hean1g00363 363
1 10371900 10372623 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004071 Hean1g00364 364
1 10419028 10423621 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004081 Hean1g00365 365
1 10443919 10444517 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004091 Hean1g00366 366
1 10458560 10461113 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004101 Hean1g00367 367
1 10463051 10463612 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004111 Hean1g00368 368
1 10493340 10493807 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004131 Hean1g00369 369
1 10708464 10713765 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004141 Hean1g00370 370
11 107645203 107646102 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0495411 Hean11g02469 2469
11 107797198 107797725 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0495431 Hean11g02471 2471
1 15598935 15599764 - >Htub.h1tg000484l.g161.t1 Hetu1g00351 351
1 15714206 15719827 + >Htub.h1tg000484l.g158.t1 Hetu1g00353 353
1 15720963 15721502 - >Htub.h1tg000484l.g157.t1 Hetu1g00354 354
1 15735907 15740226 + >Htub.h1tg000484l.g156.t1 Hetu1g00355 355
1 15769061 15770094 + >Htub.h1tg001740l.g109.t1 Hetu1g00356 356
1 15824734 15825159 - >Htub.h1tg001740l.g111.t1 Hetu1g00358 358
1 115786507 115797420 - >Htub.h1tg001853l.g228.t1 Hetu1g01916 1916
2 12075270 12076188 - >Htub.h2tg000795l.g153.t1 Hetu2g00313 313
2 12226829 12231872 + >Htub.h2tg000795l.g154.t1 Hetu2g00314 314
2 12232925 12233464 - >Htub.h2tg000795l.g155.t1 Hetu2g00315 315
2 12237889 12242277 + >Htub.h2tg000795l.g156.t1 Hetu2g00316 316
2 12348219 12348671 - >Htub.h2tg000795l.g159.t1 Hetu2g00319 319
3 13022157 13023049 - >Htub.h1tg001937l.g46.t1 Hetu3g00319 319
3 13166212 13171816 + >Htub.h1tg001937l.g45.t1 Hetu3g00320 320
3 13173051 13173590 - >Htub.h1tg001937l.g44.t1 Hetu3g00321 321
3 13178042 13182353 + >Htub.h1tg001937l.g43.t1 Hetu3g00322 322
3 13224866 13226216 + >Htub.h1tg001937l.g42.t1 Hetu3g00323 323
3 13257918 13258343 - >Htub.h1tg001937l.g38.t1 Hetu3g00327 327
3 13757633 13759537 - >Htub.h1tg001937l.g32.t1 Hetu3g00333 333
31 118348885 118349589 + >Htub.h1tg001293l.g155.t1 Hetu31g02080 2080
31 118536290 118539317 + >Htub.h1tg001293l.g158.t1 Hetu31g02083 2083
32 118618016 118618726 + >Htub.h1tg003119l.g166.t1 Hetu32g02085 2085
32 119629394 119629921 + >Htub.h1tg003119l.g176.t1 Hetu32g02094 2094
16 86015793 86017015 - KAD3338303.1 Mimi16g02233 2233
16 86056427 86063392 + KAD3338304.1 Mimi16g02234 2234
16 86064061 86064615 - KAD3338305.1 Mimi16g02235 2235
16 86074078 86077172 + KAD3338306.1 Mimi16g02236 2236
16 86098833 86101612 + KAD3338308.1 Mimi16g02238 2238
16 86118386 86118871 - KAD3338309.1 Mimi16g02239 2239
16 86354846 86356627 + KAD3338318.1 Mimi16g02248 2248
1 124929682 124930465 - KAI3829727.1 Smso1g03764 3764
1 125018473 125019021 - KAI3829728.1 Smso1g03765 3765
1 125039851 125043124 + KAI3829729.1 Smso1g03766 3766
1 125063743 125067254 + KAI3829730.1 Smso1g03767 3767
1 125075301 125075804 - KAI3829731.1 Smso1g03768 3768
1 125194396 125196129 + KAI3829735.1 Smso1g03772 3772
20 54851823 54852329 - KAI3742638.1 Smso20g01642 1642
28 9992550 9993098 + KAI3682668.1 Smso28g00388 388
28 9994011 9999425 - KAI3682669.1 Smso28g00389 389
28 34056145 34059003 + KAI3682959.1 Smso28g00679 679
1 132449052 132451177 - Streb.1G044850.1 Stre1g04485 4485
1 132481526 132487463 + Streb.1G044870.1 Stre1g04487 4487
1 132488043 132488582 - Streb.1G044880.1 Stre1g04488 4488
1 132499587 132502023 + Streb.1G044890.1 Stre1g04489 4489
1 132503313 132507020 + Streb.1G044900.1 Stre1g04490 4490
1 132537196 132537786 - Streb.1G044910.1 Stre1g04491 4491
1 132614070 132617962 + Streb.1G044930.1 Stre1g04493 4493
4 56912942 56913985 - >KAK1428373.1 Taer4g02596 2596
4 56948153 56953550 + >KAK1428374.1 Taer4g02597 2597
4 56961958 56964757 + >KAK1428376.1 Taer4g02599 2599
4 57025617 57028871 + >KAK1428379.1 Taer4g02602 2602
       
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