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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00421 Cobi9g01282 Bial10g02042 Bial22g01581 . . Hetu1g01912 . Hetu3g01691 . Smso1g01141 Smso28g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00422 . . . . . . . Hetu3g01690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00423 . . . . . Hetu1g01908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00424 . . . . . . . . . . . . . . . . . . . Hean11g02972 Cobi6g00901 Bial12g02876 Bial24g02715 . . Hetu32g02538 Hetu31g02531 Hetu33g02444 Amtr05g01326 . Smso20g01885 Taer4g00711 Fro13g01409 Fso12g01961 Ftr6g02376 Fra13g01370 Fli9g01467 Stre1g01850 Mimi16g00702
Hean1g00425 . Bial10g02041 Bial22g01580 . . Hetu1g01907 . Hetu3g01689 . Smso1g01142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00426 Cobi9g01281 Bial10g02039 Bial22g01578 . . Hetu1g01906 . Hetu3g01688 . Smso1g01152 Smso28g00675 . . . . . . Stre1g04039 Mimi16g01773 . . . . . . . . . . . . . . . . . . . .
Hean1g00427 . Bial10g02038 Bial22g01577 . . Hetu1g01905 . Hetu3g01687 . Smso1g01153 Smso28g00674 . . . . . . . . Hean11g02976 Cobi6g00896 Bial12g02880 Bial24g02719 . . Hetu32g02542 Hetu31g02537 Hetu33g02448 Amtr05g01329 . . . . . . . . Stre1g01855 .
Hean1g00428 . . . . . . . . . Smso1g01154 Smso28g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00430 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
5 22414727 22419329 + AtrifAMIRv0_Chr05g0337201 Amtr05g01326 1326
5 22438120 22442088 + AtrifAMIRv0_Chr05g0337231 Amtr05g01329 1329
10 21837187 21840323 - g86131.t1 Bial10g02038 2038
10 21841700 21845154 - g86130.t1 Bial10g02039 2039
10 21865676 21869896 + g86128.t1 Bial10g02041 2041
10 21871466 21873084 + g86127.t1 Bial10g02042 2042
12 58866450 58871071 + g36075.t1 Bial12g02876 2876
12 58881658 58887078 + g36079.t1 Bial12g02880 2880
22 16946372 16949949 - g112786.t1 Bial22g01577 1577
22 16950833 16954279 - g112785.t1 Bial22g01578 1578
22 16974801 16979021 + g112783.t1 Bial22g01580 1580
22 16980591 16982209 + g112782.t1 Bial22g01581 1581
24 57861403 57864415 + g68381.t1 Bial24g02715 2715
24 57881084 57882858 + g68385.t1 Bial24g02719 2719
6 7271400 7273247 - h2tg000031l_1.g19209.t1 Cobi6g00896 896
6 7284976 7289964 - h2tg000031l_1.g19214.t1 Cobi6g00901 901
9 49006208 49010333 - h2tg000008l_1.g40722.t1 Cobi9g01281 1281
9 49035821 49036501 + h2tg000008l_1.g40723.t1 Cobi9g01282 1282
9 72800281 72803627 - FliAMIRv0_Chr09g0222331 Fli9g01467 1467
13 41953007 41956354 + FraAMIRv0_Chr13g0266781 Fra13g01370 1370
13 23505982 23509529 - FroAMIRv0_Chr13g0235911 Fro13g01409 1409
12 58153346 58156644 - FsoAMIRv0_Chr12g0309251 Fso12g01961 1961
6 90832028 90835422 - FtrAMIRv0_Chr06g0185241 Ftr6g02376 2376
1 12313282 12315532 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004701 Hean1g00421 421
1 12326739 12327758 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004711 Hean1g00422 422
1 12327781 12329951 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004721 Hean1g00423 423
1 12331195 12331735 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004731 Hean1g00424 424
1 12332251 12337262 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004741 Hean1g00425 425
1 12355069 12362502 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004751 Hean1g00426 426
1 12366523 12369846 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004761 Hean1g00427 427
1 12373477 12384926 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004771 Hean1g00428 428
1 12375800 12376474 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004781 Hean1g00429 429
1 12419004 12420963 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0004791 Hean1g00430 430
11 140107557 140113283 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0501711 Hean11g02972 2972
11 140287210 140292015 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0501761 Hean11g02976 2976
1 115288460 115293681 - >Htub.h1tg001853l.g217.t1 Hetu1g01905 1905
1 115293903 115301404 - >Htub.h1tg001853l.g218.t1 Hetu1g01906 1906
1 115384584 115395177 + >Htub.h1tg001853l.g219.t1 Hetu1g01907 1907
1 115395966 115405870 - >Htub.h1tg001853l.g220.t1 Hetu1g01908 1908
1 115428863 115429950 + >Htub.h1tg001853l.g224.t1 Hetu1g01912 1912
3 103217688 103220499 - >Htub.h1tg002641l.g100.t1 Hetu3g01687 1687
3 103222969 103230565 - >Htub.h1tg002641l.g101.t1 Hetu3g01688 1688
3 103310762 103315246 + >Htub.h1tg002641l.g102.t1 Hetu3g01689 1689
3 103315374 103320910 - >Htub.h1tg002641l.g103.t1 Hetu3g01690 1690
3 103338830 103339888 + >Htub.h1tg002641l.g104.t1 Hetu3g01691 1691
31 146954713 146959597 + >Htub.h1tg000896l.g747.t1 Hetu31g02531 2531
31 147119695 147123859 + >Htub.h1tg000896l.g753.t1 Hetu31g02537 2537
32 148784329 148789368 + >Htub.h1tg001892l.g211.t1 Hetu32g02538 2538
32 148922922 148927196 + >Htub.h1tg001892l.g207.t1 Hetu32g02542 2542
33 139678410 139683249 + >Htub.h1tg001992l.g159.t1 Hetu33g02444 2444
33 139832711 139836801 + >Htub.h1tg002022l.g380.t1 Hetu33g02448 2448
16 33614962 33628329 + KAD3336772.1 Mimi16g00702 702
16 77153574 77160163 + KAD3337843.1 Mimi16g01773 1773
1 23391249 23392950 - KAI3827104.1 Smso1g01141 1141
1 23395830 23399215 - KAI3827105.1 Smso1g01142 1142
1 23518119 23531578 + KAI3827115.1 Smso1g01152 1152
1 23602571 23605321 + KAI3827116.1 Smso1g01153 1153
1 23621890 23651938 - KAI3827117.1 Smso1g01154 1154
20 62794762 62799082 - KAI3742881.1 Smso20g01885 1885
28 31442322 31444755 + KAI3682952.1 Smso28g00672 672
28 33122351 33125208 - KAI3682954.1 Smso28g00674 674
28 33379937 33386087 - KAI3682955.1 Smso28g00675 675
28 33400589 33402511 + KAI3682956.1 Smso28g00676 676
1 47101441 47105128 - Streb.1G018500.1 Stre1g01850 1850
1 47481308 47489916 + Streb.1G018550.1 Stre1g01855 1855
1 125300888 125306285 + Streb.1G040390.1 Stre1g04039 4039
4 5409612 5413658 + >KAK1426644.1 Taer4g00711 711
       
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