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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00112 Cobi2g02272 Bial10g01304 Bial22g00896 . Dapi20g01788 Hetu1g00106 Hetu2g00166 Hetu3g00100 Amtr12g00357 Smso1g03607 Smso28g00484 Taer4g02377 Fro14g01274 . . Fra18g01758 Fli3g00825 Stre1g04327 Mimi16g02095 . . . . . . . . . . . . . . . . . . . .
Hean1g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00115 Cobi2g02275 . . . Dapi20g01790 . . . Amtr12g00370 Smso1g03609 . Taer4g02379 Fro14g01276 Fso1g02093 Ftr2g00761 Fra18g01762 Fli3g00810 . Mimi16g02097 . . . . . . . . . . . . . . . . . . . .
Hean1g00116 Cobi2g02276 . . . Dapi20g01791 . . . Amtr12g00373 Smso1g03610 . Taer4g02380 Fro14g01277 Fso1g02095 Ftr2g00741 Fra18g01763 Fli3g00808 Stre1g04331 Mimi16g02098 . . . . . . . . . . . . . . . . . . . .
Hean1g00117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00118 Cobi2g02277 Bial10g01308 . . Dapi20g01792 Hetu1g00111 . Hetu3g00108 Amtr12g00378 Smso1g03611 Smso28g00483 Taer4g02381 Fro14g01278 Fso1g02096 Ftr2g00739 Fra18g01764 Fli3g00805 Stre1g04332 Mimi16g02100 Hean11g02611 Cobi6g01028 Bial12g02740 Bial24g02585 . Dapi31g02069 Hetu32g02215 Hetu31g02194 . Amtr07g06336 . Smso20g01828 Taer4g02381 Fro13g01346 . . Fra13g01434 Fli9g01391 Stre1g04332 Mimi16g02100
Hean1g00119 Cobi2g02278 Bial10g01309 . . Dapi20g01793 Hetu1g00112 Hetu2g00171 Hetu3g00109 Amtr12g00384 Smso1g03612 Smso28g00482 Taer4g02382 Fro14g01279 Fso1g02097 . Fra18g01765 Fli3g00804 Stre1g04333 Mimi16g02101 . . . . . . . . . . . . . . . . . . . .
Hean1g00120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 135217922 135219539 + AtrifAMIRv0_Chr07g0514831 Amtr07g06336 6336
12 12263927 12270036 + AtrifAMIRv0_Chr12g0720891 Amtr12g00357 357
12 12588104 12595090 + AtrifAMIRv0_Chr12g0721021 Amtr12g00370 370
12 12686603 12690793 + AtrifAMIRv0_Chr12g0721051 Amtr12g00373 373
12 12737937 12739921 - AtrifAMIRv0_Chr12g0721101 Amtr12g00378 378
12 12799380 12799868 + AtrifAMIRv0_Chr12g0721161 Amtr12g00384 384
10 12988989 12994977 + g86865.t1 Bial10g01304 1304
10 13037815 13040000 - g86861.t1 Bial10g01308 1308
10 13041781 13042275 + g86860.t1 Bial10g01309 1309
12 57513700 57515158 - g35939.t1 Bial12g02740 2740
22 8555576 8561700 + g147138.t1 Bial22g00896 896
24 56642522 56646392 - g68251.t1 Bial24g02585 2585
2 69453601 69460435 + h2tg000016l_1.g4974.t1 Cobi2g02272 2272
2 69619584 69626008 + h2tg000016l_1.g4971.t1 Cobi2g02275 2275
2 69646918 69650058 + h2tg000016l_1.g4970.t1 Cobi2g02276 2276
2 69679543 69681091 - h2tg000016l_1.g4969.t1 Cobi2g02277 2277
2 69686327 69686836 + h2tg000016l_1.g4968.t1 Cobi2g02278 2278
6 8273852 8276892 + h2tg000031l_1.g19341.t1 Cobi6g01028 1028
20 106867630 106875186 + h1tg000169l.g129609.t1 Dapi20g01788 1788
20 106999346 107009955 + h1tg000169l.g129607.t1 Dapi20g01790 1790
20 107023858 107025914 + h1tg000169l.g129606.t1 Dapi20g01791 1791
20 107047403 107048972 - h1tg000169l.g129605.t1 Dapi20g01792 1792
20 107122718 107123191 + h1tg000169l.g129604.t1 Dapi20g01793 1793
31 101871575 101873694 - h2tg000063l.g12154.t1 Dapi31g02069 2069
3 22207162 22207692 - FliAMIRv0_Chr03g0080731 Fli3g00804 804
3 22208819 22210174 + FliAMIRv0_Chr03g0080741 Fli3g00805 805
3 22228759 22231594 - FliAMIRv0_Chr03g0080771 Fli3g00808 808
3 22300600 22303203 - FliAMIRv0_Chr03g0080791 Fli3g00810 810
3 22515284 22519839 - FliAMIRv0_Chr03g0080941 Fli3g00825 825
9 71203742 71205414 - FliAMIRv0_Chr09g0221571 Fli9g01391 1391
13 42637139 42638759 + FraAMIRv0_Chr13g0267421 Fra13g01434 1434
18 65919782 65925456 + FraAMIRv0_Chr18g0359551 Fra18g01758 1758
18 66008174 66010724 + FraAMIRv0_Chr18g0359591 Fra18g01762 1762
18 66031711 66035259 + FraAMIRv0_Chr18g0359601 Fra18g01763 1763
18 66061652 66063148 - FraAMIRv0_Chr18g0359611 Fra18g01764 1764
18 66064208 66064675 + FraAMIRv0_Chr18g0359621 Fra18g01765 1765
13 22937663 22939340 - FroAMIRv0_Chr13g0235281 Fro13g01346 1346
14 20316445 20321352 + FroAMIRv0_Chr14g0254281 Fro14g01274 1274
14 20362819 20365835 + FroAMIRv0_Chr14g0254301 Fro14g01276 1276
14 20381156 20383864 + FroAMIRv0_Chr14g0254311 Fro14g01277 1277
14 20392264 20393749 - FroAMIRv0_Chr14g0254321 Fro14g01278 1278
14 20397037 20397606 + FroAMIRv0_Chr14g0254331 Fro14g01279 1279
1 60559323 60561958 + FsoAMIRv0_Chr01g0020921 Fso1g02093 2093
1 60592764 60595489 + FsoAMIRv0_Chr01g0020941 Fso1g02095 2095
1 60605006 60606416 - FsoAMIRv0_Chr01g0020951 Fso1g02096 2096
1 60610744 60611268 + FsoAMIRv0_Chr01g0020961 Fso1g02097 2097
2 13741476 13742984 + FtrAMIRv0_Chr02g0036061 Ftr2g00739 739
2 13807306 13809533 - FtrAMIRv0_Chr02g0036081 Ftr2g00741 741
2 14214536 14218897 + FtrAMIRv0_Chr02g0036281 Ftr2g00761 761
1 2266619 2268155 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001261 Hean1g00111 111
1 2272369 2280128 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001271 Hean1g00112 112
1 2317407 2320333 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001281 Hean1g00113 113
1 2321966 2324832 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001291 Hean1g00114 114
1 2342425 2348821 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001301 Hean1g00115 115
1 2350236 2357102 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001321 Hean1g00116 116
1 2353783 2355575 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001331 Hean1g00117 117
1 2381583 2384338 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001341 Hean1g00118 118
1 2387993 2388640 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001351 Hean1g00119 119
1 2511637 2512420 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001361 Hean1g00120 120
11 116910930 116914527 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0497021 Hean11g02611 2611
1 4034102 4041109 + >Htub.h1tg003317l.g72.t1 Hetu1g00106 106
1 4293055 4295502 - >Htub.h1tg003317l.g78.t1 Hetu1g00111 111
1 4385688 4386185 + >Htub.h1tg003050l.g373.t1 Hetu1g00112 112
2 4978094 4984944 + >Htub.h1tg002382l.g207.t1 Hetu2g00166 166
2 5384393 5384890 + >Htub.h1tg002382l.g213.t1 Hetu2g00171 171
3 3943775 3953176 + >Htub.h1tg004213l.g251.t1 Hetu3g00100 100
3 4222270 4224383 - >Htub.h1tg000727l.g5.t1 Hetu3g00108 108
3 4226559 4227056 + >Htub.h1tg000727l.g6.t1 Hetu3g00109 109
31 125886630 125889602 - >Htub.h1tg004008l.g200.t1 Hetu31g02194 2194
32 128062428 128064438 - >Htub.h1tg003616l.g6.t1 Hetu32g02215 2215
16 83091500 83102141 + KAD3338165.1 Mimi16g02095 2095
16 83203751 83210037 + KAD3338167.1 Mimi16g02097 2097
16 83222875 83227627 + KAD3338168.1 Mimi16g02098 2098
16 83266568 83268585 - KAD3338170.1 Mimi16g02100 2100
16 83274605 83275099 + KAD3338171.1 Mimi16g02101 2101
1 121326559 121332783 + KAI3829570.1 Smso1g03607 3607
1 121399956 121402626 + KAI3829572.1 Smso1g03609 3609
1 121442835 121444887 + KAI3829573.1 Smso1g03610 3610
1 121449405 121452125 - KAI3829574.1 Smso1g03611 3611
1 121467311 121467814 + KAI3829575.1 Smso1g03612 3612
20 61697138 61699670 - KAI3742824.1 Smso20g01828 1828
28 13371649 13374215 - KAI3682762.1 Smso28g00482 482
28 13375333 13377763 + KAI3682763.1 Smso28g00483 483
28 13610527 13616600 - KAI3682764.1 Smso28g00484 484
1 129444314 129449077 + Streb.1G043270.1 Stre1g04327 4327
1 129571869 129586926 + Streb.1G043310.1 Stre1g04331 4331
1 129589580 129591919 - Streb.1G043320.1 Stre1g04332 4332
1 129595743 129598552 + Streb.1G043330.1 Stre1g04333 4333
4 53896224 53905348 + >KAK1428159.1 Taer4g02377 2377
4 53948511 53956021 + >KAK1428161.1 Taer4g02379 2379
4 53978203 53982792 + >KAK1428162.1 Taer4g02380 2380
4 53983868 53986397 - >KAK1428163.1 Taer4g02381 2381
4 53988370 53988897 + >KAK1428164.1 Taer4g02382 2382
       
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