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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g00970 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00971 . Nenu1g00662 Nenu6g01134 . . . Tesi22g00298 . . . . . . . . . . . . . . . . .
Eupl14g00972 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00973 . Nenu1g00661 Nenu6g01133 . . . . . . . . . Nin6g00946 Nin9g02229 . . . . . . . . . .
Eupl14g00974 . . . Tesi1g00377 . Tesi21g00636 . . . Vivi15g00392 . . Nin6g00947 . . . . . . . . . . .
Eupl14g00975 . . . . . . Tesi22g00297 Busi12g00607 Busi8g00427 . . . . Nin9g02295 . . . . . . . . . .
Eupl14g00976 . Nenu1g00660 Nenu6g01132 . . . . . Busi8g00429 Vivi15g00391 . . . . . . Arla11g00199 . . . . . . .
Eupl14g00977 . Nenu1g00658 Nenu6g01131 . Tesi1g00931 . . Busi12g00607 . Vivi15g00388 Vivi16g00374 . Nin6g00951 Nin9g02296 . Arla13g00309 . . . . Arla2g00009 . . .
Eupl14g00978 . Nenu1g00657 Nenu6g01130 . . . . Busi12g00609 . . Vivi16g00375 . . Nin9g02297 . . . . . . Arla2g00008 . . .
Eupl14g00979 . . . . . Tesi21g00638 . . Busi8g00430 . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 141964 147690 - evm.model.000353F.14 Arla2g00008 8
2 148426 150416 - evm.model.000353F.15 Arla2g00009 9
11 5837470 5843771 - evm.model.000200F.116 Arla11g00199 199
13 20017087 20020172 + evm.model.000146F.131 Arla13g00309 309
12 29619103 29621457 - BUSI_023157-RA Busi12g00607 607
12 29605136 29616670 - BUSI_023156-RA Busi12g00609 609
8 5816224 5821633 + BUSI_015914-RA Busi8g00427 427
8 5807242 5811560 - BUSI_015913-RA Busi8g00429 429
8 5822619 5828109 - BUSI_015915-RA Busi8g00430 430
14 14378578 14388046 + evm.model.CTG_122.8 Eupl14g00970 970
14 14465430 14466527 - evm.model.CTG_122.10 Eupl14g00971 971
14 14474552 14474752 + evm.model.CTG_122.11 Eupl14g00972 972
14 14475690 14476487 - evm.model.CTG_122.12 Eupl14g00973 973
14 14497708 14502108 - evm.model.CTG_122.13 Eupl14g00974 974
14 14516823 14519391 + evm.model.CTG_122.14 Eupl14g00975 975
14 14527273 14531641 - evm.model.CTG_278.1 Eupl14g00976 976
14 14546350 14554178 + evm.model.CTG_278.2 Eupl14g00977 977
14 14588540 14609801 + evm.model.CTG_278.3 Eupl14g00978 978
14 14609151 14613440 - evm.model.CTG_278.4 Eupl14g00979 979
1 18377403 18477841 - OF00671.mRNA1 Nenu1g00657 657
1 18485034 18487370 - OF00672.mRNA1 Nenu1g00658 658
1 18542367 18545193 + OF00674.mRNA1 Nenu1g00660 660
1 18565321 18565737 + OF00675.mRNA1 Nenu1g00661 661
1 18573939 18574741 + OF00676.mRNA1 Nenu1g00662 662
6 38473590 38530786 - OF11014.mRNA1 Nenu6g01130 1130
6 38548403 38551108 - OF11013.mRNA1 Nenu6g01131 1131
6 38597859 38600712 + OF11012.mRNA1 Nenu6g01132 1132
6 38645934 38646719 + OF11011.mRNA1 Nenu6g01133 1133
6 38661676 38662464 + OF11010.mRNA1 Nenu6g01134 1134
6 11121373 11122920 - NinS16399.t1 Nin6g00946 946
6 11212362 11218553 - NinS16400.t1 Nin6g00947 947
6 11297604 11299666 - NinS16404.t1 Nin6g00951 951
9 34052059 34055494 + NinS26679.t1 Nin9g02229 2229
9 34661628 34663467 + NinS26745.t1 Nin9g02295 2295
9 34661628 34663467 + NinS26746.t1 Nin9g02296 2296
9 34664843 34680002 + NinS26747.t1 Nin9g02297 2297
1 7452515 7457271 - Tesin01G0040200.1 Tesi1g00377 377
1 21293926 21297489 - Tesin01G0097800.1 Tesi1g00931 931
21 13074264 13083324 - Tesin21G0068800.1 Tesi21g00636 636
21 13105463 13111214 - Tesin21G0069000.1 Tesi21g00638 638
22 21331246 21334155 - Tesin22G0031900.1 Tesi22g00297 297
22 21349327 21350756 + Tesin22G0032100.1 Tesi22g00298 298
15 13646659 13651283 - GSVIVT01018169001 Vivi15g00388 388
15 13708127 13710873 - GSVIVT01018165001 Vivi15g00391 391
15 13710962 13712124 - GSVIVT01018164001 Vivi15g00392 392
16 9955226 9957621 + GSVIVT01014046001 Vivi16g00374 374
16 9970380 10045231 + GSVIVT01014047001 Vivi16g00375 375
       
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