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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00428 Sain12g00381 Ceso2g03463 Cati3g00458 Ccar2g02027 Cien5g03245 Cich4g04534 Lssa7g03487 . . Tamo4g02828 . . . . . . . Artr3g11496 . . Aann4g01078 . Chmo13g00821 . Chmo15g00712 Chla6g05904 Chna2g00685 Cind3g01695 Pdy4g00545 Cobi6g01379 Hean15g03957 Bial24g02208 Bial12g02349 . . . Hetu16g02593 . Amtr02g04101 . Smso13g00231 . . . . . . Stre9g01572 . . . . . . . . . . . . . . . . . . . . .
Armi1g00429 Sain12g00383 Ceso2g03464 Cati3g00462 . Cien5g03244 Cich4g04533 Lssa7g03485 . Tako4g03908 Tamo4g02832 Pslu1g21205 Lomi1g00326 . . Ecan3g02191 Soca5g02430 . . . . Aann4g01080 . Chmo13g00820 . Chmo15g00711 Chla6g05905 Chna2g00684 Cind3g01694 Pdy4g00544 . Hean15g03955 . . . . Hetu17g02469 Hetu16g02598 . Amtr02g04100 . . . . . . . . Stre9g01573 . Cobi4g03074 Hean11g00880 Bial4g03357 Bial16g02753 Dapi7g00342 Dapi23g00368 Hetu32g00688 Hetu31g00650 . Amtr02g06943 . . . . . . . . Stre6g00442 Mimi17g00436
Armi1g00430 Sain12g00384 . Cati3g00465 . Cien5g03243 Cich4g04532 Lssa7g03484 . Tako4g03910 Tamo4g02834 Pslu1g21206 Lomi1g00325 Lomi2g04341 . . . . . . . Aann4g01083 . . . . . . . . Cobi6g01378 Hean15g03952 . Bial12g02350 . . Hetu17g02470 Hetu16g02599 Hetu18g02750 . . Smso13g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . Cati3g00466 . Cien5g03242 Cich4g04531 Lssa7g03483 Laca7g02830 Tako4g03911 Tamo4g02836 . . . Enbr6g00776 Ecan3g02190 Soca5g02432 Glco3g01214 . . . Aann4g01087 . . . . . . . Pdy4g00540 . . . . . . . . . . . . . . . . . . . . Cobi4g03076 Hean11g00876 Bial4g03359 Bial16g02755 Dapi7g00341 Dapi23g00365 Hetu32g00687 Hetu31g00648 Hetu33g00789 Amtr02g06946 . . . . . . . . Stre6g00441 Mimi17g00433
Armi1g00431 Sain12g00387 Ceso2g03465 Cati3g00467 Ccar2g02026 . . . . . . Pslu1g21209 Lomi1g00324 Lomi2g04342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . Cati3g00468 Ccar2g02025 Cien5g03241 Cich4g04530 Lssa7g03482 Laca7g02829 . . Pslu1g21213 . . Enbr6g00777 Ecan3g02189 Soca5g02434 . . . . Aann4g01088 . . . . . . . Pdy4g00539 Cobi6g01377 Hean15g03951 Bial24g02209 Bial12g02351 . . Hetu17g02472 Hetu16g02600 Hetu18g02752 Amtr02g04099 . Smso13g00227 . . . . . . Stre9g01574 Mimi9g01439 Cobi4g03077 Hean11g00875 Bial4g03361 Bial16g02757 . Dapi23g00364 Hetu32g00685 Hetu31g00647 Hetu33g00788 . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00437 Sain12g00388 Ceso2g03466 Cati3g00469 Ccar2g02024 . . . . . . . . Lomi2g04343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 59219412 59223447 - chr4g0774761 Aann4g01078 1078
4 59238159 59238924 - chr4g0774791 Aann4g01080 1080
4 59267212 59271764 + chr4g0774851 Aann4g01083 1083
4 59385312 59390583 + chr4g0775011 Aann4g01087 1087
4 59436384 59443888 - chr4g0775081 Aann4g01088 1088
2 81594550 81601369 - AtrifAMIRv0_Chr02g0136951 Amtr02g04099 4099
2 81627284 81628009 + AtrifAMIRv0_Chr02g0136961 Amtr02g04100 4100
2 81643069 81646615 + AtrifAMIRv0_Chr02g0136971 Amtr02g04101 4101
2 126604555 126606034 - AtrifAMIRv0_Chr02g0165391 Amtr02g06943 6943
2 126706801 126716452 + AtrifAMIRv0_Chr02g0165421 Amtr02g06946 6946
1 8040787 8045151 - AmiAMIRv0_Chr01g0004281 Armi1g00428 428
1 8169883 8171237 - AmiAMIRv0_Chr01g0004291 Armi1g00429 429
1 8202180 8206732 + AmiAMIRv0_Chr01g0004301 Armi1g00430 430
1 8212962 8218635 + AmiAMIRv0_Chr01g0004311 Armi1g00431 431
1 8481367 8490021 - AmiAMIRv0_Chr01g0004371 Armi1g00437 437
3 388881731 388885138 - AtridAMIRv0_Chr03g0422321 Artr3g11496 11496
4 76704395 76705866 - g43196.t1 Bial4g03357 3357
4 76763235 76766529 + g43198.t1 Bial4g03359 3359
4 76781270 76783254 - g43200.t1 Bial4g03361 3361
12 53785888 53788929 - g35548.t1 Bial12g02349 2349
12 53793406 53795607 + g35549.t1 Bial12g02350 2350
12 53796290 53801459 - g35550.t1 Bial12g02351 2351
16 70786045 70787516 - g127447.t1 Bial16g02753 2753
16 70838484 70841777 + g127445.t1 Bial16g02755 2755
16 70856518 70858517 - g127443.t1 Bial16g02757 2757
24 52657783 52660824 - g67874.t1 Bial24g02208 2208
24 52668185 52673354 - g67875.t1 Bial24g02209 2209
3 4023971 4028634 - CtAH03T0032700.1 Cati3g00458 458
3 4278164 4279223 + CtAH03T0033000.1 Cati3g00462 462
3 4296063 4304711 + CtAH03T0033200.1 Cati3g00465 465
3 4313407 4314494 + CtAH03T0033300.1 Cati3g00466 466
3 4316741 4321262 + CtAH03T0033400.1 Cati3g00467 467
3 4329665 4340215 - CtAH03T0033500.1 Cati3g00468 468
3 4329665 4340215 - CtAH03T0033500.2 Cati3g00469 469
2 67353441 67356606 + gnl|WGS:LEKV|Ccrd_011071.mRNA.1_mrna Ccar2g02024 2024
2 67357006 67361638 + gnl|WGS:LEKV|Ccrd_011072.mRNA.1_mrna Ccar2g02025 2025
2 67365722 67368680 - gnl|WGS:LEKV|Ccrd_011073.mRNA.1_mrna Ccar2g02026 2026
2 67385302 67390774 + gnl|WGS:LEKV|Ccrd_011074.mRNA.1_mrna Ccar2g02027 2027
2 85416058 85420105 - >KAJ9563345.1 Ceso2g03463 3463
2 85430924 85432281 - >KAJ9563344.1 Ceso2g03464 3464
2 85453764 85459860 + >KAJ9563341.1 Ceso2g03465 3465
2 85465461 85472358 - >KAJ9563346.1 Ceso2g03466 3466
6 236700178 236703701 - ClaG1_Chr06g0431511 Chla6g05904 5904
6 236876221 236877258 - ClaG1_Chr06g0431521 Chla6g05905 5905
13 40912896 40913940 + evm.model.scaffold_461.248 Chmo13g00820 820
13 41044057 41047299 + evm.model.scaffold_461.251 Chmo13g00821 821
15 39904129 39905172 + evm.model.scaffold_279.96 Chmo15g00711 711
15 40014540 40018671 + evm.model.scaffold_279.95 Chmo15g00712 712
2 51820429 51821475 + Cn0066710 Chna2g00684 684
2 51950414 51953778 + Cn0066730 Chna2g00685 685
4 131653184 131659803 + KAI3753665.1 Cich4g04530 4530
4 131708469 131710935 - KAI3753666.1 Cich4g04531 4531
4 131713637 131719300 - KAI3753667.1 Cich4g04532 4532
4 131728359 131729161 + KAI3753668.1 Cich4g04533 4533
4 131739154 131740990 + KAI3753669.1 Cich4g04534 4534
5 77768596 77772931 + KAI3509761.1 Cien5g03241 3241
5 77792026 77795619 - KAI3509762.1 Cien5g03242 3242
5 77799344 77806634 - KAI3509763.1 Cien5g03243 3243
5 77811152 77811957 + KAI3509764.1 Cien5g03244 3244
5 77836916 77838755 + KAI3509765.1 Cien5g03245 3245
3 328430570 328431625 - D.indicum_Contig189_G00058.t1 Cind3g01694 1694
3 328316457 328319688 - D.indicum_Contig189_G00059.t1 Cind3g01695 1695
4 79956012 79957610 - h2tg000009l_1.g42205.t1 Cobi4g03074 3074
4 79976079 79978999 + h2tg000009l_1.g42203.t1 Cobi4g03076 3076
4 79982141 79990351 - h2tg000009l_1.g42202.t1 Cobi4g03077 3077
6 11170452 11175274 + h2tg000021l_1.g11299.t1 Cobi6g01377 1377
6 11175523 11178512 - h2tg000021l_1.g11298.t1 Cobi6g01378 1378
6 11181095 11184301 + h2tg000021l_1.g11297.t1 Cobi6g01379 1379
7 7204308 7207287 - h1tg000030l.g76931.t1 Dapi7g00341 341
7 7238737 7239877 + h1tg000030l.g76932.t1 Dapi7g00342 342
23 7887523 7890685 + h2tg000233l.g74328.t1 Dapi23g00364 364
23 7898202 7902707 - h2tg000233l.g74329.t1 Dapi23g00365 365
23 7976256 7977296 + h2tg000233l.g74332.t1 Dapi23g00368 368
3 32663417 32669690 + XM_043766021.1 Ecan3g02189 2189
3 32671570 32675830 - XM_043766879.1 Ecan3g02190 2190
3 32688206 32689521 + XM_043767079.1 Ecan3g02191 2191
6 27452915 27461162 + evm.model.ctg2073.1 Enbr6g00776 776
6 27464287 27472157 - evm.model.ctg2073.2 Enbr6g00777 777
3 74450392 74452422 - GcoAMIRv0_Chr03g0168431 Glco3g01214 1214
11 20652735 20660479 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0476131 Hean11g00875 875
11 20673530 20678044 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0476141 Hean11g00876 876
11 20825860 20827106 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0476181 Hean11g00880 880
15 151716769 151723808 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716671 Hean15g03951 3951
15 151833343 151839149 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716681 Hean15g03952 3952
15 152197306 152198004 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716731 Hean15g03955 3955
15 152281059 152284940 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716751 Hean15g03957 3957
16 137808338 137811604 - >Htub.h1tg001448l.g61.t1 Hetu16g02593 2593
16 138080096 138080785 - >Htub.h1tg001448l.g66.t1 Hetu16g02598 2598
16 138168104 138172579 + >Htub.h1tg001448l.g67.t1 Hetu16g02599 2599
16 138227988 138241838 - >Htub.h1tg001448l.g68.t1 Hetu16g02600 2600
17 130184493 130185176 - >Htub.h1tg000886l.g507.t1 Hetu17g02469 2469
17 130338234 130341702 + >Htub.h1tg000886l.g506.t1 Hetu17g02470 2470
17 130379454 130387450 - >Htub.h1tg000886l.g504.t1 Hetu17g02472 2472
18 138205639 138209107 + >Htub.h1tg003689l.g53.t1 Hetu18g02750 2750
18 138252783 138260786 - >Htub.h1tg003689l.g55.t1 Hetu18g02752 2752
31 26083012 26084740 + >Htub.h1tg001429l.g213.t1 Hetu31g00647 647
31 26107839 26111969 - >Htub.h1tg001429l.g212.t1 Hetu31g00648 648
31 26289296 26290316 + >Htub.h1tg002695l.g189.t1 Hetu31g00650 650
32 29408679 29411145 + >Htub.h1tg002251l.g206.t1 Hetu32g00685 685
32 29440724 29445378 - >Htub.h1tg002251l.g204.t1 Hetu32g00687 687
32 29597370 29598730 + >Htub.h1tg002251l.g203.t1 Hetu32g00688 688
33 30506400 30513189 + >Htub.h1tg001292l.g381.t1 Hetu33g00788 788
33 30538515 30542645 - >Htub.h1tg001292l.g382.t1 Hetu33g00789 789
7 135461832 135466048 + CAI9295017.1 Laca7g02829 2829
7 135473391 135476811 - CAI9295018.1 Laca7g02830 2830
1 2763523 2766169 - LmiAMIRv0_Chr01g0003241 Lomi1g00324 324
1 2772515 2776186 - LmiAMIRv0_Chr01g0003251 Lomi1g00325 325
1 2788000 2788980 + LmiAMIRv0_Chr01g0003261 Lomi1g00326 326
2 48794450 48798136 + LmiAMIRv0_Chr02g0088741 Lomi2g04341 4341
2 48799713 48802525 + LmiAMIRv0_Chr02g0088751 Lomi2g04342 4342
2 48805185 48809839 - LmiAMIRv0_Chr02g0088761 Lomi2g04343 4343
7 184276068 184279719 + >KAJ0197835.1 Lssa7g03482 3482
7 184308318 184311293 - >KAJ0196360.1 Lssa7g03483 3483
7 184313210 184316393 - >KAJ0196829.1 Lssa7g03484 3484
7 184353441 184354243 + >KAJ0195332.1 Lssa7g03485 3485
7 184423352 184425575 + >KAJ0197018.1 Lssa7g03487 3487
9 48825212 48834944 + KAD5318174.1 Mimi9g01439 1439
17 14733551 14737390 - KAD3066755.1 Mimi17g00433 433
17 14830730 14831660 + KAD3066758.1 Mimi17g00436 436
4 10110769 10117444 + PdyAMIRv0_Chr04g0153461 Pdy4g00539 539
4 10133399 10139554 - PdyAMIRv0_Chr04g0153471 Pdy4g00540 540
4 10188801 10189661 - PdyAMIRv0_Chr04g0153511 Pdy4g00544 544
4 10205670 10210533 + PdyAMIRv0_Chr04g0153521 Pdy4g00545 545
1 152482495 152483461 - PluAMIRv0_Chr01g0211111 Pslu1g21205 21205
1 152499814 152500101 + PluAMIRv0_Chr01g0211121 Pslu1g21206 21206
1 152513987 152517310 + PluAMIRv0_Chr01g0211151 Pslu1g21209 21209
1 152528852 152534440 - PluAMIRv0_Chr01g0211191 Pslu1g21213 21213
12 7392617 7395240 - SinAMIRv0_Chr12g0359451 Sain12g00381 381
12 7437695 7438710 - SinAMIRv0_Chr12g0359471 Sain12g00383 383
12 7444946 7448937 + SinAMIRv0_Chr12g0359481 Sain12g00384 384
12 7482644 7488116 + SinAMIRv0_Chr12g0359511 Sain12g00387 387
12 7499359 7505794 - SinAMIRv0_Chr12g0359521 Sain12g00388 388
13 16941397 16947642 + KAI3786484.1 Smso13g00227 227
13 16948592 16951725 - KAI3786485.1 Smso13g00228 228
13 17104025 17105741 + KAI3786488.1 Smso13g00231 231
5 26002459 26002938 - augustus16680.t01 Soca5g02430 2430
5 26008402 26013362 + augustus16681.t02 Soca5g02432 2432
5 26022798 26029306 - transfrag11083.t01 Soca5g02434 2434
6 11825480 11831256 - Streb.6G004410.1 Stre6g00441 441
6 11891151 11892120 + Streb.6G004420.1 Stre6g00442 442
9 27603312 27608148 - Streb.9G015720.1 Stre9g01572 1572
9 27640982 27641656 - Streb.9G015730.1 Stre9g01573 1573
9 27645884 27650616 - Streb.9G015740.1 Stre9g01574 1574
4 87948828 87949569 - TkA04G348130.1 Tako4g03908 3908
4 87974918 87978190 + TkA04G348220.1 Tako4g03910 3910
4 87989189 87993306 + TkA04G348280.1 Tako4g03911 3911
4 53595333 53597930 - TbA04G029920.1 Tamo4g02828 2828
4 53655340 53656019 - TbA04G029840.1 Tamo4g02832 2832
4 53666183 53669326 + TbA04G029820.1 Tamo4g02834 2834
4 53728506 53732453 + TbA04G029780.1 Tamo4g02836 2836
       
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