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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00271 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00274 Cobi2g02371 Bial10g01396 Bial22g00987 Dapi4g01940 Dapi20g01885 Hetu1g00239 Hetu2g00265 Hetu3g00234 . Smso1g03717 Smso28g00429 Taer4g02506 Fro14g01365 Fso1g02227 . Fra18g01524 Fli3g00665 Stre1g04417 Mimi16g02176 . . . . . . . . . . . . . . . . . . . .
Hean1g00275 Cobi2g02372 . . Dapi4g01941 . Hetu1g00240 Hetu2g00266 Hetu3g00235 Amtr12g01665 . . . Fro14g01366 Fso1g02228 Ftr2g00573 Fra18g01525 Fli3g00664 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00276 Cobi2g02376 . . Dapi4g01942 . Hetu1g00241 Hetu2g00267 Hetu3g00236 . Smso1g03718 . Taer4g02507 Fro14g01367 Fso1g02229 Ftr2g00570 Fra18g01526 Fli3g00663 Stre1g04418 Mimi16g02177 . . . . . . . . . . . . . . . . . . . .
Hean1g00277 Cobi2g02377 Bial10g01397 Bial22g00988 Dapi4g01943 . Hetu1g00242 Hetu2g00268 Hetu3g00237 Amtr12g01663 Smso1g03719 . Taer4g02508 Fro14g01368 Fso1g02230 Ftr2g00569 Fra18g01527 Fli3g00662 Stre1g04419 . . . . . . . . . . . . . . . . . . . . .
Hean1g00278 . . . . . Hetu1g00244 Hetu2g00269 Hetu3g00238 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00279 Cobi2g02379 Bial10g01398 . Dapi4g01944 . Hetu1g00245 Hetu2g00270 Hetu3g00239 Amtr12g01662 Smso1g03720 Smso28g00428 Taer4g02510 Fro14g01369 Fso1g02231 Ftr2g00568 Fra18g01528 Fli3g00657 Stre1g04420 . . . . . . . . . . . . . . . . . . . . .
Hean1g00280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
12 39487502 39490159 - AtrifAMIRv0_Chr12g0733941 Amtr12g01662 1662
12 39495858 39499017 + AtrifAMIRv0_Chr12g0733951 Amtr12g01663 1663
12 39504858 39506529 + AtrifAMIRv0_Chr12g0733971 Amtr12g01665 1665
10 14031350 14035562 + g86773.t1 Bial10g01396 1396
10 14043374 14046346 - g86772.t1 Bial10g01397 1397
10 14050905 14053273 + g86771.t1 Bial10g01398 1398
22 9650999 9655211 + g147047.t1 Bial22g00987 987
22 9664485 9665995 - g147046.t1 Bial22g00988 988
2 72029894 72032297 + h2tg000016l_1.g4875.t1 Cobi2g02371 2371
2 72037012 72040420 - h2tg000016l_1.g4874.t1 Cobi2g02372 2372
2 72177807 72179621 - h2tg000016l_1.g4870.t1 Cobi2g02376 2376
2 72179984 72182167 - h2tg000016l_1.g4869.t1 Cobi2g02377 2377
2 72197516 72200298 + h2tg000016l_1.g4867.t1 Cobi2g02379 2379
4 118631334 118635358 + h1tg000121l.g120176.t1 Dapi4g01940 1940
4 118640117 118641878 - h1tg000121l.g120175.t1 Dapi4g01941 1941
4 118646891 118647531 - h1tg000121l.g120174.t1 Dapi4g01942 1942
4 118647913 118651240 - h1tg000121l.g120173.t1 Dapi4g01943 1943
4 118657561 118661491 + h1tg000121l.g120172.t1 Dapi4g01944 1944
20 110667899 110670572 + h1tg000169l.g129512.t1 Dapi20g01885 1885
3 17217716 17220576 - FliAMIRv0_Chr03g0079261 Fli3g00657 657
3 17268971 17273121 + FliAMIRv0_Chr03g0079311 Fli3g00662 662
3 17273682 17274331 + FliAMIRv0_Chr03g0079321 Fli3g00663 663
3 17279969 17281661 + FliAMIRv0_Chr03g0079331 Fli3g00664 664
3 17283635 17287051 - FliAMIRv0_Chr03g0079341 Fli3g00665 665
18 60146416 60154789 + FraAMIRv0_Chr18g0357211 Fra18g01524 1524
18 60156462 60158041 - FraAMIRv0_Chr18g0357221 Fra18g01525 1525
18 60160854 60161503 - FraAMIRv0_Chr18g0357231 Fra18g01526 1526
18 60161937 60165906 - FraAMIRv0_Chr18g0357241 Fra18g01527 1527
18 60171901 60174701 + FraAMIRv0_Chr18g0357251 Fra18g01528 1528
14 21663266 21666532 + FroAMIRv0_Chr14g0255191 Fro14g01365 1365
14 21667976 21669880 - FroAMIRv0_Chr14g0255201 Fro14g01366 1366
14 21673741 21674387 - FroAMIRv0_Chr14g0255211 Fro14g01367 1367
14 21674819 21678752 - FroAMIRv0_Chr14g0255221 Fro14g01368 1368
14 21680751 21683568 + FroAMIRv0_Chr14g0255231 Fro14g01369 1369
1 63338826 63341566 + FsoAMIRv0_Chr01g0022261 Fso1g02227 2227
1 63343797 63345465 - FsoAMIRv0_Chr01g0022271 Fso1g02228 2228
1 63356573 63357222 - FsoAMIRv0_Chr01g0022281 Fso1g02229 2229
1 63357655 63362042 - FsoAMIRv0_Chr01g0022291 Fso1g02230 2230
1 63363773 63369130 + FsoAMIRv0_Chr01g0022301 Fso1g02231 2231
2 10259650 10262526 - FtrAMIRv0_Chr02g0034351 Ftr2g00568 568
2 10265453 10269763 + FtrAMIRv0_Chr02g0034361 Ftr2g00569 569
2 10270196 10270845 + FtrAMIRv0_Chr02g0034371 Ftr2g00570 570
2 10281181 10282818 + FtrAMIRv0_Chr02g0034401 Ftr2g00573 573
1 7100076 7101735 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003081 Hean1g00271 271
1 7184055 7186446 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003091 Hean1g00272 272
1 7186448 7187619 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003101 Hean1g00273 273
1 7222028 7226077 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003111 Hean1g00274 274
1 7227685 7229300 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003121 Hean1g00275 275
1 7233906 7234582 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003131 Hean1g00276 276
1 7234980 7239498 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003141 Hean1g00277 277
1 7256620 7257451 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003151 Hean1g00278 278
1 7269175 7274120 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003161 Hean1g00279 279
1 7277292 7277683 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0003171 Hean1g00280 280
1 9399040 9402541 + >Htub.h1tg003050l.g508.t1 Hetu1g00239 239
1 9403792 9405409 - >Htub.h1tg003050l.g509.t1 Hetu1g00240 240
1 9426726 9427673 - >Htub.h1tg003050l.g510.t1 Hetu1g00241 241
1 9427785 9431450 - >Htub.h1tg003050l.g511.t1 Hetu1g00242 242
1 9450974 9452195 - >Htub.h1tg000402l.g46.t1 Hetu1g00244 244
1 9537847 9542212 + >Htub.h1tg000402l.g45.t1 Hetu1g00245 245
2 9556701 9563031 + >Htub.h2tg002589l.g199.t1 Hetu2g00265 265
2 9564767 9566372 - >Htub.h2tg002589l.g198.t1 Hetu2g00266 266
2 9571114 9571780 - >Htub.h2tg002589l.g197.t1 Hetu2g00267 267
2 9572164 9575965 - >Htub.h2tg002589l.g196.t1 Hetu2g00268 268
2 9587813 9588392 - >Htub.h2tg002589l.g195.t1 Hetu2g00269 269
2 9611167 9614757 + >Htub.h2tg002589l.g194.t1 Hetu2g00270 270
3 9700598 9706928 + >Htub.h1tg000727l.g137.t1 Hetu3g00234 234
3 9708664 9710269 - >Htub.h1tg000727l.g138.t1 Hetu3g00235 235
3 9715011 9715952 - >Htub.h1tg000727l.g139.t1 Hetu3g00236 236
3 9716061 9719862 - >Htub.h1tg000727l.g140.t1 Hetu3g00237 237
3 9731710 9732289 - >Htub.h1tg000727l.g141.t1 Hetu3g00238 238
3 9755066 9758656 + >Htub.h1tg000727l.g142.t1 Hetu3g00239 239
16 84850300 84852691 + KAD3338246.1 Mimi16g02176 2176
16 84856020 84878064 - KAD3338247.1 Mimi16g02177 2177
1 123711385 123714497 + KAI3829680.1 Smso1g03717 3717
1 123718807 123722582 - KAI3829681.1 Smso1g03718 3718
1 123722984 123727618 - KAI3829682.1 Smso1g03719 3719
1 123733224 123736773 + KAI3829683.1 Smso1g03720 3720
28 11416239 11422632 - KAI3682708.1 Smso28g00428 428
28 11446125 11449621 - KAI3682709.1 Smso28g00429 429
1 130991733 130994621 + Streb.1G044170.1 Stre1g04417 4417
1 130995955 130997265 - Streb.1G044180.1 Stre1g04418 4418
1 131006868 131009164 - Streb.1G044190.1 Stre1g04419 4419
1 131010084 131011954 + Streb.1G044200.1 Stre1g04420 4420
4 55656265 55659534 + >KAK1428285.1 Taer4g02506 2506
4 55660805 55662216 - >KAK1428286.1 Taer4g02507 2507
4 55668300 55671592 - >KAK1428287.1 Taer4g02508 2508
4 55685558 55688581 + >KAK1428289.1 Taer4g02510 2510
       
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