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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. Sain12g00066 . . Ccar2g02228 . . . . . . Pslu1g20802 Lomi1g00433 Lomi2g04214 . . . . . . . . . Chmo13g01049 Chmo14g00991 Chmo15g00922 Chla6g05677 Chna2g00911 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00060 . . Cati3g00083 Ccar2g02229 . . . . . . Pslu1g20801 . . . Ecan3g00250 Soca5g05426 . . . . . . Chmo13g01052 Chmo14g00992 Chmo15g00924 . Chna2g00912 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00061 Sain12g00068 . Cati3g00084 Ccar2g02230 Cien5g03504 Cich4g04823 Lssa7g03749 Laca7g03061 . . Pslu1g20800 . . Enbr6g03224 Ecan3g00249 Soca5g05416 Glco3g01487 Artr3g10897 Aary5g02616 Aary13g03137 Aann4g00808 . Chmo13g01055 Chmo14g00998 Chmo15g00928 . Chna2g00915 . Pdy4g00807 . . . . . . . . . . . . . . . . . . . . Cobi4g02828 Hean11g01602 Bial4g03053 Bial16g02483 . Dapi23g00552 Hetu32g00975 Hetu31g00923 Hetu33g01040 Amtr02g06597 Smso7g00468 Smso29g00620 Taer1g05895 Fro12g02186 Fso2g00434 Ftr4g03494 Fra11g02362 Fli1g00496 Stre6g00659 Mimi17g00723
Armi1g00062 Sain12g00069 . . . . . . . . . . . Lomi2g04213 . Ecan3g00248 Soca5g05414 . . . . . . Chmo13g01056 Chmo14g00999 Chmo15g00929 Chla6g05672 Chna2g00916 Cind3g02103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00063 Sain12g00070 . Cati3g00087 . Cien5g03510 Cich4g04826 Lssa7g03751 Laca7g03067 Tako4g03485 . Pslu1g20799 Lomi1g00434 Lomi2g04212 Enbr6g03223 Ecan3g00247 Soca5g05412 Glco3g01493 Artr3g10890 Aary5g02615 Aary13g03136 Aann4g00805 . Chmo13g01058 Chmo14g01001 Chmo15g00935 Chla6g05670 Chna2g00918 Cind3g02099 Pdy4g00809 . . . . . . . . . . . . . . . . . . . . Cobi4g02826 Hean11g01599 Bial4g03050 Bial16g02481 Dapi7g00536 Dapi23g00554 Hetu32g00977 Hetu31g00925 Hetu33g01042 Amtr02g06594 Smso7g00472 Smso29g00623 Taer1g05899 Fro12g02184 Fso2g00439 . Fra11g02360 Fli1g00498 Stre6g00664 Mimi17g00728
Armi1g00064 Sain12g00072 . Cati3g00088 Ccar2g02232 Cien5g03511 Cich4g04827 Lssa7g03752 Laca7g03068 . . Pslu1g20797 Lomi1g00435 Lomi2g04211 Enbr6g03387 Ecan3g00245 Soca5g05410 Glco3g01497 Artr3g10885 Aary5g02614 Aary13g03134 Aann4g00801 . Chmo13g01059 Chmo14g01002 Chmo15g00937 Chla6g05669 Chna2g00919 Cind3g02098 Pdy4g00810 . . . . . . . . . . . . . . . . . . . . Cobi4g02825 Hean11g01598 . Bial16g02476 Dapi7g00537 Dapi23g00555 Hetu32g00978 Hetu31g00930 Hetu33g01043 Amtr02g06593 Smso7g00473 Smso29g00624 Taer1g05900 Fro12g02183 Fso2g00440 Ftr4g03492 Fra11g02359 Fli1g00499 Stre6g00665 Mimi17g00732
Armi1g00065 Sain12g00073 . . Ccar2g02233 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00068 Sain12g00074 . . Ccar2g02234 . . . . . . . . . . . . . . . . . Chma7g07419 . . . Chla6g05667 Chna2g00921 Cind3g02095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 50861504 50863792 - chr4g0767201 Aann4g00801 801
4 50892803 50899862 - chr4g0767271 Aann4g00805 805
4 50931357 50934439 - chr4g0767311 Aann4g00808 808
5 151088136 151089853 - Aargg5g26140.1 Aary5g02614 2614
5 151105148 151109624 - Aargg5g26150.1 Aary5g02615 2615
5 151287541 151291696 - Aargg5g26160.1 Aary5g02616 2616
13 185805956 185807941 - Aargg13g31340.1 Aary13g03134 3134
13 185861719 185867787 - Aargg13g31360.1 Aary13g03136 3136
13 186029551 186032137 - Aargg13g31370.1 Aary13g03137 3137
2 119505332 119506371 - AtrifAMIRv0_Chr02g0161891 Amtr02g06593 6593
2 119512193 119516171 - AtrifAMIRv0_Chr02g0161901 Amtr02g06594 6594
2 119527350 119530668 - AtrifAMIRv0_Chr02g0161931 Amtr02g06597 6597
1 1050923 1051267 - AmiAMIRv0_Chr01g0000601 Armi1g00060 60
1 1053238 1056858 + AmiAMIRv0_Chr01g0000611 Armi1g00061 61
1 1062272 1062832 + AmiAMIRv0_Chr01g0000621 Armi1g00062 62
1 1069098 1073684 + AmiAMIRv0_Chr01g0000631 Armi1g00063 63
1 1075251 1076953 + AmiAMIRv0_Chr01g0000641 Armi1g00064 64
1 1078008 1082647 - AmiAMIRv0_Chr01g0000651 Armi1g00065 65
1 1133971 1137555 + AmiAMIRv0_Chr01g0000681 Armi1g00068 68
3 367484197 367486003 - AtridAMIRv0_Chr03g0416211 Artr3g10885 10885
3 367566832 367572497 - AtridAMIRv0_Chr03g0416261 Artr3g10890 10890
3 367754132 367756837 - AtridAMIRv0_Chr03g0416331 Artr3g10897 10897
4 69600674 69603606 - g42889.t1 Bial4g03050 3050
4 69622177 69625451 - g42892.t1 Bial4g03053 3053
16 64234292 64239469 - g150106.t1 Bial16g02476 2476
16 64283678 64285766 - g150101.t1 Bial16g02481 2481
16 64305856 64309127 - g150099.t1 Bial16g02483 2483
3 384160 384504 - CtAH03T0004200.1 Cati3g00083 83
3 385643 389557 + CtAH03T0004300.1 Cati3g00084 84
3 407757 411200 + CtAH03T0004600.1 Cati3g00087 87
3 416194 419917 + CtAH03T0004700.1 Cati3g00088 88
2 69359006 69360075 - gnl|WGS:LEKV|Ccrd_011279.mRNA.1_mrna Ccar2g02228 2228
2 69366338 69367246 - gnl|WGS:LEKV|Ccrd_011280.mRNA.1_mrna Ccar2g02229 2229
2 69368056 69371506 + gnl|WGS:LEKV|Ccrd_011281.mRNA.1_mrna Ccar2g02230 2230
2 69381736 69389172 + gnl|WGS:LEKV|Ccrd_011283.mRNA.1_mrna Ccar2g02232 2232
2 69389327 69394180 - gnl|WGS:LEKV|Ccrd_011284.mRNA.1_mrna Ccar2g02233 2233
2 69396372 69398802 + gnl|WGS:LEKV|Ccrd_011285.mRNA.1_mrna Ccar2g02234 2234
6 224512989 224516190 - ClaG1_Chr06g0429141 Chla6g05667 5667
6 224621735 224623493 - ClaG1_Chr06g0429161 Chla6g05669 5669
6 224624616 224628685 - ClaG1_Chr06g0429171 Chla6g05670 5670
6 224769419 224779016 - ClaG1_Chr06g0429191 Chla6g05672 5672
6 224902410 224904462 + ClaG1_Chr06g0429241 Chla6g05677 5677
7 254832564 254834361 - CmaNakai_Chr07g0697211 Chma7g07419 7419
13 54221221 54223124 - evm.model.scaffold_2891.83 Chmo13g01049 1049
13 54245076 54256964 - evm.model.scaffold_2891.86 Chmo13g01052 1052
13 54318784 54321373 + evm.model.scaffold_2891.91 Chmo13g01055 1055
13 54325931 54327431 + evm.model.scaffold_2891.92 Chmo13g01056 1056
13 54576738 54582642 + evm.model.scaffold_2891.103 Chmo13g01058 1058
13 54592817 54594852 + evm.model.scaffold_2891.105 Chmo13g01059 1059
14 48854378 48856292 - evm.model.scaffold_490.148 Chmo14g00991 991
14 48927637 48931219 - evm.model.scaffold_490.145 Chmo14g00992 992
14 49288385 49290931 + evm.model.scaffold_490.130 Chmo14g00998 998
14 49294669 49298630 + evm.model.scaffold_490.129 Chmo14g00999 999
14 49417756 49422242 + evm.model.scaffold_490.118 Chmo14g01001 1001
14 49423422 49425359 + evm.model.scaffold_490.117 Chmo14g01002 1002
15 53179270 53179569 - evm.model.scaffold_875.91 Chmo15g00922 922
15 53185458 53196355 - evm.model.scaffold_875.93 Chmo15g00924 924
15 53252211 53254694 + evm.model.scaffold_875.97 Chmo15g00928 928
15 53257634 53258717 + evm.model.scaffold_875.98 Chmo15g00929 929
15 53527312 53532181 + evm.model.scaffold_875.109 Chmo15g00935 935
15 53534152 53536413 + evm.model.scaffold_875.111 Chmo15g00937 937
2 69183412 69183711 - Cn0813540 Chna2g00911 911
2 69193764 69195948 - Cn0813550 Chna2g00912 912
2 69267788 69270861 + Cn0813600 Chna2g00915 915
2 69274573 69275121 + Cn0813610 Chna2g00916 916
2 69567837 69571109 + Cn0813640 Chna2g00918 918
2 69571835 69573701 + Cn0813650 Chna2g00919 919
2 69705923 69709210 + Cn0813690 Chna2g00921 921
4 136875452 136878413 + KAI3753958.1 Cich4g04823 4823
4 136919682 136922530 + KAI3753961.1 Cich4g04826 4826
4 136924891 136926920 + KAI3753962.1 Cich4g04827 4827
5 80954402 80956656 + KAI3510024.1 Cien5g03504 3504
5 81020317 81023146 + KAI3510030.1 Cien5g03510 3510
5 81027412 81029336 + KAI3510031.1 Cien5g03511 3511
3 313654493 313657121 - D.indicum_Contig21_G00139.t1 Cind3g02095 2095
3 313824904 313826441 - D.indicum_Contig21_G00142.t1 Cind3g02098 2098
3 313829422 313835296 - D.indicum_Contig21_G00143.t1 Cind3g02099 2099
3 314233484 314240373 - D.indicum_Contig21_G00147.t1 Cind3g02103 2103
4 76010333 76012561 - h2tg000009l_1.g42454.t1 Cobi4g02825 2825
4 76017284 76020977 - h2tg000009l_1.g42453.t1 Cobi4g02826 2826
4 76035494 76039352 - h2tg000009l_1.g42451.t1 Cobi4g02828 2828
7 11496280 11500150 + h1tg000030l.g77126.t1 Dapi7g00536 536
7 11503879 11505379 + h1tg000030l.g77127.t1 Dapi7g00537 537
23 12305922 12315068 + h2tg000020l.g165147.t1 Dapi23g00552 552
23 12321745 12325455 + h2tg000020l.g165145.t1 Dapi23g00554 554
23 12329332 12330747 + h2tg000020l.g165144.t1 Dapi23g00555 555
3 2749786 2752076 - XM_043763623.1 Ecan3g00245 245
3 2754786 2759520 - XM_043763418.1 Ecan3g00247 247
3 2782521 2783789 - XM_043766887.1 Ecan3g00248 248
3 2786800 2790740 - XM_043763033.1 Ecan3g00249 249
3 2798664 2799530 + XM_043766852.1 Ecan3g00250 250
6 117292231 117296629 - evm.model.ctg4439.3 Enbr6g03223 3223
6 117313068 117316239 - evm.model.ctg4439.5 Enbr6g03224 3224
6 123341890 123343881 - evm.model.ctg1308.4 Enbr6g03387 3387
1 10087335 10090207 + FliAMIRv0_Chr01g0004911 Fli1g00496 496
1 10146056 10150163 + FliAMIRv0_Chr01g0004931 Fli1g00498 498
1 10156608 10158280 + FliAMIRv0_Chr01g0004941 Fli1g00499 499
11 77352275 77353943 - FraAMIRv0_Chr11g0223811 Fra11g02359 2359
11 77356367 77365842 - FraAMIRv0_Chr11g0223821 Fra11g02360 2360
11 77377024 77379884 - FraAMIRv0_Chr11g0223841 Fra11g02362 2362
12 29249649 29251140 - FroAMIRv0_Chr12g0217311 Fro12g02183 2183
12 29253813 29257964 - FroAMIRv0_Chr12g0217321 Fro12g02184 2184
12 29268392 29271250 - FroAMIRv0_Chr12g0217341 Fro12g02186 2186
2 5854197 5857056 + FsoAMIRv0_Chr02g0032531 Fso2g00434 434
2 5881850 5885821 + FsoAMIRv0_Chr02g0032581 Fso2g00439 439
2 5887852 5889498 + FsoAMIRv0_Chr02g0032591 Fso2g00440 440
4 117876586 117878225 - FtrAMIRv0_Chr04g0129261 Ftr4g03492 3492
4 117897072 117899944 - FtrAMIRv0_Chr04g0129281 Ftr4g03494 3494
3 96226836 96229007 + GcoAMIRv0_Chr03g0171161 Glco3g01487 1487
3 96392275 96396002 + GcoAMIRv0_Chr03g0171221 Glco3g01493 1493
3 96467181 96469479 + GcoAMIRv0_Chr03g0171261 Glco3g01497 1497
11 48654465 48656180 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484731 Hean11g01598 1598
11 48662019 48666846 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484741 Hean11g01599 1599
11 48687504 48691403 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484771 Hean11g01602 1602
31 41336810 41341888 + >Htub.h1tg002121l.g155.t1 Hetu31g00923 923
31 41356336 41360474 + >Htub.h1tg002121l.g157.t1 Hetu31g00925 925
31 41477465 41478627 + >Htub.h1tg002121l.g162.t1 Hetu31g00930 930
32 45109151 45116146 + >Htub.h1tg000795l.g221.t1 Hetu32g00975 975
32 45138935 45143061 + >Htub.h1tg000795l.g223.t1 Hetu32g00977 977
32 45239997 45241159 + >Htub.h1tg000795l.g224.t1 Hetu32g00978 978
33 43983362 43988766 + >Htub.h1tg001052l.g324.t1 Hetu33g01040 1040
33 44007983 44012101 + >Htub.h1tg001052l.g322.t1 Hetu33g01042 1042
33 44134285 44135438 + >Htub.h1tg001052l.g321.t1 Hetu33g01043 1043
7 145134729 145137565 + CAI9295258.1 Laca7g03061 3061
7 145191192 145194462 + CAI9295264.1 Laca7g03067 3067
7 145203211 145207227 + CAI9295265.1 Laca7g03068 3068
1 3928548 3928835 - LmiAMIRv0_Chr01g0004331 Lomi1g00433 433
1 3957201 3960793 + LmiAMIRv0_Chr01g0004341 Lomi1g00434 434
1 3967446 3968820 + LmiAMIRv0_Chr01g0004351 Lomi1g00435 435
2 47605615 47607056 - LmiAMIRv0_Chr02g0087441 Lomi2g04211 4211
2 47614046 47618129 - LmiAMIRv0_Chr02g0087451 Lomi2g04212 4212
2 47625518 47626099 - LmiAMIRv0_Chr02g0087461 Lomi2g04213 4213
2 47634482 47634769 + LmiAMIRv0_Chr02g0087471 Lomi2g04214 4214
7 197197028 197200400 + >KAJ0198584.1 Lssa7g03749 3749
7 197319358 197322635 + >KAJ0198534.1 Lssa7g03751 3751
7 197329101 197331477 + >KAJ0194959.1 Lssa7g03752 3752
17 38767676 38770281 + KAD3067045.1 Mimi17g00723 723
17 38996763 39001625 + KAD3067050.1 Mimi17g00728 728
17 39320403 39321943 + KAD3067054.1 Mimi17g00732 732
4 14290127 14292923 + PdyAMIRv0_Chr04g0156141 Pdy4g00807 807
4 14323543 14327283 + PdyAMIRv0_Chr04g0156161 Pdy4g00809 809
4 14329711 14331328 + PdyAMIRv0_Chr04g0156171 Pdy4g00810 810
1 149952896 149954217 - PluAMIRv0_Chr01g0207051 Pslu1g20797 20797
1 149957286 149960815 - PluAMIRv0_Chr01g0207071 Pslu1g20799 20799
1 149970955 149976949 - PluAMIRv0_Chr01g0207081 Pslu1g20800 20800
1 149977658 149978002 + PluAMIRv0_Chr01g0207091 Pslu1g20801 20801
1 149979049 149979336 + PluAMIRv0_Chr01g0207101 Pslu1g20802 20802
12 733109 733399 - SinAMIRv0_Chr12g0356311 Sain12g00066 66
12 764303 767505 + SinAMIRv0_Chr12g0356331 Sain12g00068 68
12 785144 785692 + SinAMIRv0_Chr12g0356341 Sain12g00069 69
12 808721 814006 + SinAMIRv0_Chr12g0356351 Sain12g00070 70
12 819095 822346 + SinAMIRv0_Chr12g0356371 Sain12g00072 72
12 822851 826132 - SinAMIRv0_Chr12g0356381 Sain12g00073 73
12 862891 866538 + SinAMIRv0_Chr12g0356391 Sain12g00074 74
7 7922888 7926276 + KAI3810048.1 Smso7g00468 468
7 7973448 7977374 + KAI3810052.1 Smso7g00472 472
7 7987187 7988668 + KAI3810053.1 Smso7g00473 473
29 8869283 8872727 + KAI3675614.1 Smso29g00620 620
29 8892958 8897091 + KAI3675617.1 Smso29g00623 623
29 8898922 8900554 + KAI3675618.1 Smso29g00624 624
5 74838795 74841196 - transfrag23961.t01 Soca5g05410 5410
5 74842946 74847239 - transfrag23962.t02 Soca5g05412 5412
5 74870779 74871366 - augustus36024.t01 Soca5g05414 5414
5 74876409 74880382 - transfrag23964.t03 Soca5g05416 5416
5 74950697 74951041 + genewise30892.t01 Soca5g05426 5426
6 19063974 19066917 + Streb.6G006590.1 Stre6g00659 659
6 19110050 19115173 + Streb.6G006640.1 Stre6g00664 664
6 19125513 19127445 + Streb.6G006650.1 Stre6g00665 665
1 53242250 53245370 + >KAK1440070.1 Taer1g05895 5895
1 53256925 53260773 + >KAK1440074.1 Taer1g05899 5899
1 53261821 53263441 + >KAK1440075.1 Taer1g05900 5900
4 76822159 76826506 - TkA04G304210.1 Tako4g03485 3485
       
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