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AGRP

Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00071 . Ceso2g03197 Cati3g00091 Ccar2g02235 Cien5g03515 Cich4g04832 Lssa7g03756 Laca7g03071 Tako4g03457 . Pslu1g20791 Lomi1g00437 Lomi2g04209 Enbr6g03217 Ecan3g00242 Soca5g05394 Glco3g01510 . Aary5g02610 Aary13g03130 Aann4g00790 Chma7g07417 Chmo13g01076 . . . Chna2g00928 Cind3g02082 . . . . . . . . . . . . . . . . . . . . . Cobi4g02823 Hean11g01574 Bial4g03047 Bial16g02475 Dapi7g00539 Dapi23g00560 . Hetu31g00934 Hetu33g01047 Amtr02g06591 Smso7g00475 Smso29g00626 Taer1g05901 Fro12g02181 Fso2g00442 Ftr4g03490 . Fli1g00501 Stre6g00676 Mimi17g00742
Armi1g00072 . . . Ccar2g02236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00073 . . . . . . . . . . Pslu1g20767 . Lomi2g04207 Enbr6g03216 Ecan3g00241 Soca5g05393 . . . . . . Chmo13g01078 Chmo14g01014 Chmo15g00946 Chla6g05665 Chna2g00929 Cind3g02081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00074 . . Cati3g00094 Ccar2g02237 Cien5g03517 Cich4g04834 Lssa7g03759 Laca7g03073 Tako4g03414 . Pslu1g20766 . . Enbr6g03215 Ecan3g00238 . Glco3g01514 Artr3g10856 Aary5g02609 . Aann4g00789 . Chmo13g01079 Chmo14g01015 Chmo15g00947 Chla6g05664 Chna2g00930 Cind3g02080 Pdy4g00816 . . . . . . . . . . . . . . . . . . . . Cobi4g02821 Hean11g01570 . . . . . . . Amtr02g06589 Smso7g00479 Smso29g00628 Taer1g05903 Fro12g02178 Fso2g00443 . Fra11g02356 Fli1g00503 Stre6g00677 Mimi17g00748
Armi1g00075 Sain12g00076 Ceso2g03198 Cati3g00095 Ccar2g02238 Cien5g03518 . Lssa7g03760 Laca7g03074 Tako4g03413 . Pslu1g20761 Lomi1g00438 Lomi2g04206 . Ecan3g00237 Soca5g05390 Glco3g01517 Artr3g10850 Aary5g02608 . Aann4g00786 Chma7g07415 Chmo13g01080 Chmo14g01016 Chmo15g00948 Chla6g05662 Chna2g00931 Cind3g02074 . . . . . . . . . . . . . . . . . . . . . Cobi4g02820 Hean11g01566 Bial4g03043 . Dapi7g00543 Dapi23g00564 . Hetu31g00940 Hetu33g01064 Amtr02g06584 Smso7g00480 Smso29g00629 . . . . . . Stre6g00680 Mimi17g00755
Armi1g00077 Sain12g00077 Ceso2g03199 Cati3g00096 Ccar2g02239 Cien5g03520 Cich4g04839 Lssa7g03761 Laca7g03075 . . Pslu1g20758 Lomi1g00439 Lomi2g04205 . Ecan3g00235 Soca5g05389 Glco3g01518 Artr3g10840 Aary5g02606 Aary13g03129 Aann4g00785 Chma7g07413 Chmo13g01082 Chmo14g01017 Chmo15g00949 Chla6g05661 Chna2g00932 Cind3g02073 Pdy4g00825 . . . . . . . . . . . . . . . . . . . . Cobi4g02819 Hean11g01564 Bial4g03042 Bial16g02469 Dapi7g00545 Dapi23g00565 . Hetu31g00942 Hetu33g01066 Amtr02g06582 Smso7g00482 Smso29g00631 Taer1g05906 Fro12g02176 . Ftr4g03486 Fra11g02354 Fli1g00505 Stre6g00681 Mimi17g00756
Armi1g00078 Sain12g00080 Ceso2g03200 Cati3g00098 Ccar2g02240 Cien5g03521 Cich4g04840 Lssa7g03762 Laca7g03076 Tako4g03410 . Pslu1g20757 Lomi1g00440 Lomi2g04203 Enbr6g03208 Ecan3g00233 Soca5g05387 Glco3g01519 . . . . . Chmo13g01084 Chmo14g01019 Chmo15g00953 Chla6g05657 Chna2g00933 Cind3g02071 Pdy4g00826 . . . . . . . . . . . . . . . . . . . . Cobi4g02817 Hean11g01563 Bial4g03040 Bial16g02468 Dapi7g00546 Dapi23g00566 . Hetu31g00943 Hetu33g01067 Amtr02g06581 Smso7g00484 Smso29g00632 . . . . . . . .
Armi1g00079 Sain12g00082 Ceso2g03201 Cati3g00100 . Cien5g03523 Cich4g04842 Lssa7g03765 Laca7g03077 . Tamo4g02107 Pslu1g20756 Lomi1g00441 Lomi2g04202 Enbr6g03207 Ecan3g00231 Soca5g05386 Glco3g01528 Artr3g10803 . . Aann4g00779 Chma7g07444 Chmo13g01097 Chmo14g01023 Chmo15g00963 Chla6g05645 Chna2g00939 Cind3g02063 Pdy4g00829 . Hean6g02879 . . . . Hetu17g02305 Hetu16g02401 Hetu18g02584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00080 Sain12g00083 Ceso2g03202 Cati3g00104 . Cien5g03524 Cich4g04843 Lssa7g03766 Laca7g03078 Tako4g03012 Tamo4g02108 Pslu1g20749 Lomi1g00443 Lomi2g04201 Enbr6g03206 Ecan3g00230 Soca5g05385 Glco3g01529 Artr3g10802 . . Aann4g00778 Chma7g07445 Chmo13g01098 Chmo14g01024 Chmo15g00964 Chla6g05644 Chna2g00940 Cind3g02062 Pdy4g00830 . . . . . . . . . . . . . . . . . . . . Cobi4g02815 Hean11g01559 Bial4g03038 Bial16g02466 Dapi7g00548 Dapi23g00568 . Hetu31g00945 Hetu33g01070 Amtr02g06577 Smso7g00488 Smso29g00635 Taer1g05912 Fro12g02173 Fso2g00446 Ftr4g03480 Fra11g02350 Fli1g00510 Stre6g00689 .
Armi1g00081 Sain12g00084 Ceso2g03203 Cati3g00105 Ccar2g02327 Cien5g03525 Cich4g04844 Lssa7g03767 . Tako4g02944 Tamo4g02114 Pslu1g20748 Lomi1g00444 Lomi2g04200 Enbr6g03204 Ecan3g00227 Soca5g05382 Glco3g01530 Artr3g10801 . . Aann4g00777 Chma7g07449 Chmo13g01099 Chmo14g01025 Chmo15g00965 Chla6g05643 Chna2g00941 Cind3g02061 Pdy4g00831 . . . . . . . . . . . . . . . . . . . . Cobi4g02814 Hean11g01558 Bial4g03036 Bial16g02465 Dapi7g00549 Dapi23g00569 . Hetu31g00946 Hetu33g01071 Amtr02g06576 Smso7g00489 Smso29g00637 Taer1g05913 Fro12g02172 Fso2g00447 Ftr4g03479 Fra11g02349 Fli1g00511 Stre6g00690 .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 49945022 49947278 + chr4g0766551 Aann4g00777 777
4 49947280 49956339 - chr4g0766561 Aann4g00778 778
4 49957091 49973200 - chr4g0766571 Aann4g00779 779
4 50200894 50208419 + chr4g0766711 Aann4g00785 785
4 50224601 50228322 + chr4g0766751 Aann4g00786 786
4 50413860 50415197 + chr4g0766851 Aann4g00789 789
4 50423818 50428140 - chr4g0766881 Aann4g00790 790
5 150298421 150303912 + Aargg5g26060.1 Aary5g02606 2606
5 150475758 150478684 + Aargg5g26080.1 Aary5g02608 2608
5 150568109 150571030 - Aargg5g26090.1 Aary5g02609 2609
5 150597026 150603579 - Aargg5g26100.1 Aary5g02610 2610
13 185246671 185252340 + Aargg13g31290.1 Aary13g03129 3129
13 185282459 185289033 - Aargg13g31300.1 Aary13g03130 3130
2 119295905 119298983 + AtrifAMIRv0_Chr02g0161721 Amtr02g06576 6576
2 119304089 119307957 - AtrifAMIRv0_Chr02g0161731 Amtr02g06577 6577
2 119336987 119350714 + AtrifAMIRv0_Chr02g0161771 Amtr02g06581 6581
2 119354214 119359740 + AtrifAMIRv0_Chr02g0161781 Amtr02g06582 6582
2 119372069 119377810 + AtrifAMIRv0_Chr02g0161801 Amtr02g06584 6584
2 119443232 119444566 + AtrifAMIRv0_Chr02g0161851 Amtr02g06589 6589
2 119475796 119479758 - AtrifAMIRv0_Chr02g0161871 Amtr02g06591 6591
1 1145034 1151034 + AmiAMIRv0_Chr01g0000711 Armi1g00071 71
1 1154218 1160384 + AmiAMIRv0_Chr01g0000721 Armi1g00072 72
1 1163101 1164540 - AmiAMIRv0_Chr01g0000731 Armi1g00073 73
1 1179499 1180821 + AmiAMIRv0_Chr01g0000741 Armi1g00074 74
1 1189046 1192411 - AmiAMIRv0_Chr01g0000751 Armi1g00075 75
1 1211029 1215946 - AmiAMIRv0_Chr01g0000771 Armi1g00077 77
1 1219454 1234245 - AmiAMIRv0_Chr01g0000781 Armi1g00078 78
1 1238036 1252468 + AmiAMIRv0_Chr01g0000791 Armi1g00079 79
1 1254848 1263112 + AmiAMIRv0_Chr01g0000801 Armi1g00080 80
1 1264586 1269174 - AmiAMIRv0_Chr01g0000811 Armi1g00081 81
3 364116552 364118342 + AtridAMIRv0_Chr03g0415371 Artr3g10801 10801
3 364119690 364126414 - AtridAMIRv0_Chr03g0415381 Artr3g10802 10802
3 364127738 364136766 - AtridAMIRv0_Chr03g0415391 Artr3g10803 10803
3 365605902 365613229 + AtridAMIRv0_Chr03g0415761 Artr3g10840 10840
3 365840619 365843574 + AtridAMIRv0_Chr03g0415861 Artr3g10850 10850
3 366084486 366085790 + AtridAMIRv0_Chr03g0415921 Artr3g10856 10856
4 69484768 69486191 + g42875.t1 Bial4g03036 3036
4 69489458 69491134 - g42877.t1 Bial4g03038 3038
4 69521140 69525795 + g42879.t1 Bial4g03040 3040
4 69531549 69536933 + g42881.t1 Bial4g03042 3042
4 69546592 69548911 + g42882.t1 Bial4g03043 3043
4 69574970 69578232 - g42886.t1 Bial4g03047 3047
16 64127425 64128892 + g150117.t1 Bial16g02465 2465
16 64130028 64133802 - g150116.t1 Bial16g02466 2466
16 64160765 64166661 + g150114.t1 Bial16g02468 2468
16 64172741 64174478 + g150113.t1 Bial16g02469 2469
16 64228149 64230786 - g150107.t1 Bial16g02475 2475
3 426597 434403 + CtAH03T0004900.2 Cati3g00091 91
3 436442 441213 - CtAH03T0005000.1 Cati3g00094 94
3 456663 460253 - CtAH03T0005100.1 Cati3g00095 95
3 471639 476948 - CtAH03T0005200.1 Cati3g00096 96
3 479086 497594 - CtAH03T0005300.2 Cati3g00098 98
3 500966 514391 + CtAH03T0005400.1 Cati3g00100 100
3 514512 521278 + CtAH03T0005500.1 Cati3g00104 104
3 522667 529419 - CtAH03T0005600.1 Cati3g00105 105
2 69404981 69408506 + gnl|WGS:LEKV|Ccrd_011286.mRNA.1_mrna Ccar2g02235 2235
2 69411065 69414018 + gnl|WGS:LEKV|Ccrd_011287.mRNA.1_mrna Ccar2g02236 2236
2 69415903 69417356 - gnl|WGS:LEKV|Ccrd_011288.mRNA.1_mrna Ccar2g02237 2237
2 69423717 69426500 - gnl|WGS:LEKV|Ccrd_011289.mRNA.1_mrna Ccar2g02238 2238
2 69433801 69438714 - gnl|WGS:LEKV|Ccrd_011290.mRNA.1_mrna Ccar2g02239 2239
2 69440376 69452590 - gnl|WGS:LEKV|Ccrd_011291.mRNA.1_mrna Ccar2g02240 2240
2 70439055 70440810 - gnl|WGS:LEKV|Ccrd_011378.mRNA.1_mrna Ccar2g02327 2327
2 80710475 80715277 + >KAJ9562592.1 Ceso2g03197 3197
2 80750705 80753411 - >KAJ9562594.1 Ceso2g03198 3198
2 80763984 80768700 - >KAJ9562593.1 Ceso2g03199 3199
2 80774464 80789801 - >KAJ9562978.1 Ceso2g03200 3200
2 80841737 80854013 + >KAJ9562974.1 Ceso2g03201 3201
2 80854696 80860815 + >KAJ9562975.1 Ceso2g03202 3202
2 80864182 80866769 - >KAJ9562977.1 Ceso2g03203 3203
6 223562902 223564732 + ClaG1_Chr06g0428901 Chla6g05643 5643
6 223565134 223573950 - ClaG1_Chr06g0428911 Chla6g05644 5644
6 223581442 223590490 - ClaG1_Chr06g0428921 Chla6g05645 5645
6 224207360 224215133 - ClaG1_Chr06g0429041 Chla6g05657 5657
6 224319115 224324671 + ClaG1_Chr06g0429081 Chla6g05661 5661
6 224347797 224350906 + ClaG1_Chr06g0429091 Chla6g05662 5662
6 224409993 224411399 - ClaG1_Chr06g0429111 Chla6g05664 5664
6 224426106 224427649 + ClaG1_Chr06g0429121 Chla6g05665 5665
7 254611900 254617197 + CmaNakai_Chr07g0697151 Chma7g07413 7413
7 254653022 254656047 + CmaNakai_Chr07g0697171 Chma7g07415 7415
7 254750941 254754785 - CmaNakai_Chr07g0697191 Chma7g07417 7417
7 255536133 255543929 + CmaNakai_Chr07g0697461 Chma7g07444 7444
7 255546285 255553378 + CmaNakai_Chr07g0697471 Chma7g07445 7445
7 255612879 255617359 - CmaNakai_Chr07g0697511 Chma7g07449 7449
13 55387223 55391200 + evm.model.scaffold_1237.17.1 Chmo13g01076 1076
13 55429944 55431261 - evm.model.scaffold_1237.23 Chmo13g01078 1078
13 55441697 55443109 + evm.model.scaffold_1237.24 Chmo13g01079 1079
13 55499088 55502497 - evm.model.scaffold_1237.25 Chmo13g01080 1080
13 55590739 55596013 - evm.model.scaffold_1239.167 Chmo13g01082 1082
13 55641947 55649419 + evm.model.scaffold_1239.163 Chmo13g01084 1084
13 56633344 56641701 + evm.model.scaffold_1239.99 Chmo13g01097 1097
13 56683142 56688032 + evm.model.scaffold_1239.94 Chmo13g01098 1098
13 56689060 56691014 - evm.model.scaffold_1239.93 Chmo13g01099 1099
14 50532240 50533551 - evm.model.scaffold_490.71 Chmo14g01014 1014
14 50545641 50547047 + evm.model.scaffold_490.70 Chmo14g01015 1015
14 50634205 50637757 - evm.model.scaffold_490.66 Chmo14g01016 1016
14 50673356 50678873 - evm.model.scaffold_490.64 Chmo14g01017 1017
14 50829181 50837118 + evm.model.scaffold_490.62 Chmo14g01019 1019
14 51338991 51347910 + evm.model.scaffold_490.25 Chmo14g01023 1023
14 51380322 51387416 + evm.model.scaffold_490.23 Chmo14g01024 1024
14 51388466 51390359 - evm.model.scaffold_490.22 Chmo14g01025 1025
15 54403940 54405257 - evm.model.scaffold_1049.21 Chmo15g00946 946
15 54429650 54436007 + evm.model.scaffold_1049.22 Chmo15g00947 947
15 54729119 54732672 - evm.model.scaffold_1049.46 Chmo15g00948 948
15 54761417 54766899 - evm.model.scaffold_1049.47 Chmo15g00949 949
15 54985259 54994620 + evm.model.scaffold_1049.53 Chmo15g00953 953
15 56374814 56383116 + evm.model.scaffold_1049.118 Chmo15g00963 963
15 56389415 56398951 + evm.model.scaffold_1049.119 Chmo15g00964 964
15 56399460 56401973 - evm.model.scaffold_1049.120 Chmo15g00965 965
2 70574999 70580875 + Cn0813880 Chna2g00928 928
2 70611278 70612584 - Cn0813910 Chna2g00929 929
2 70645511 70648947 + Cn0813920 Chna2g00930 930
2 70763832 70767281 - Cn0813930 Chna2g00931 931
2 70836074 70841454 - Cn0813940 Chna2g00932 932
2 71047860 71055418 + Cn0813960 Chna2g00933 933
2 71963197 71971807 + Cn1274910 Chna2g00939 939
2 71981238 71986054 + Cn1274900 Chna2g00940 940
2 71987342 71988937 - Cn1274890 Chna2g00941 941
4 136987015 136989841 + KAI3753967.1 Cich4g04832 4832
4 137106457 137107734 + KAI3753969.1 Cich4g04834 4834
4 137153121 137154242 - KAI3753974.1 Cich4g04839 4839
4 137156094 137161857 - KAI3753975.1 Cich4g04840 4840
4 137166523 137171736 + KAI3753977.1 Cich4g04842 4842
4 137174240 137182528 + KAI3753978.1 Cich4g04843 4843
4 137189525 137190836 - KAI3753979.1 Cich4g04844 4844
5 81044707 81047844 + KAI3510035.1 Cien5g03515 3515
5 81089431 81090708 + KAI3510037.1 Cien5g03517 3517
5 81117753 81127054 - KAI3510038.1 Cien5g03518 3518
5 81140913 81142034 - KAI3510040.1 Cien5g03520 3520
5 81143819 81150182 - KAI3510041.1 Cien5g03521 3521
5 81156020 81161289 + KAI3510043.1 Cien5g03523 3523
5 81164282 81167370 + KAI3510044.1 Cien5g03524 3524
5 81174180 81175855 - KAI3510045.1 Cien5g03525 3525
3 311810580 311812100 + D.indicum_Contig21_G00105.t1 Cind3g02061 2061
3 311813411 311820773 - D.indicum_Contig21_G00106.t1 Cind3g02062 2062
3 311863076 311871760 - D.indicum_Contig21_G00107.t1 Cind3g02063 2063
3 312483863 312491635 - D.indicum_Contig21_G00115.t1 Cind3g02071 2071
3 312548468 312554409 + D.indicum_Contig21_G00117.t1 Cind3g02073 2073
3 312577527 312580637 + D.indicum_Contig21_G00118.t1 Cind3g02074 2074
3 312914127 312916062 - D.indicum_Contig21_G00124.t1 Cind3g02080 2080
3 312937373 312938179 + D.indicum_Contig21_G00125.t1 Cind3g02081 2081
3 312979929 312983768 - D.indicum_Contig21_G00126.t1 Cind3g02082 2082
4 75890946 75893160 + h2tg000009l_1.g42465.t1 Cobi4g02814 2814
4 75893802 75897432 - h2tg000009l_1.g42464.t1 Cobi4g02815 2815
4 75914262 75919948 + h2tg000009l_1.g42462.t1 Cobi4g02817 2817
4 75927336 75930460 + h2tg000009l_1.g42460.t1 Cobi4g02819 2819
4 75935936 75945911 + h2tg000009l_1.g42459.t1 Cobi4g02820 2820
4 75959716 75961029 + h2tg000009l_1.g42458.t1 Cobi4g02821 2821
4 75996353 76001734 - h2tg000009l_1.g42456.t1 Cobi4g02823 2823
7 11670358 11673498 + h1tg000030l.g77129.t1 Dapi7g00539 539
7 11778471 11793490 - h1tg000030l.g77133.t1 Dapi7g00543 543
7 11825477 11827625 - h1tg000030l.g77135.t1 Dapi7g00545 545
7 11831045 11838765 - h1tg000030l.g77136.t1 Dapi7g00546 546
7 11880966 11885080 + h1tg000030l.g77138.t1 Dapi7g00548 548
7 11886125 11888799 - h1tg000030l.g77139.t1 Dapi7g00549 549
23 12406424 12409496 + h2tg000020l.g165139.t1 Dapi23g00560 560
23 12458293 12463733 - h2tg000020l.g165135.t1 Dapi23g00564 564
23 12563009 12568162 - h2tg000020l.g165134.t1 Dapi23g00565 565
23 12574279 12585998 - h2tg000020l.g165133.t1 Dapi23g00566 566
23 12632936 12637380 + h2tg000020l.g165131.t1 Dapi23g00568 568
23 12638432 12641578 - h2tg000020l.g165130.t1 Dapi23g00569 569
3 2564776 2569029 + XM_043765260.1 Ecan3g00227 227
3 2591021 2596114 - XM_043764569.1 Ecan3g00230 230
3 2596782 2608678 - XM_043766317.1 Ecan3g00231 231
3 2615713 2626922 + XM_043766312.1 Ecan3g00233 233
3 2646140 2651492 + XM_043763186.1 Ecan3g00235 235
3 2660765 2664070 + XM_043766243.1 Ecan3g00237 237
3 2672134 2673513 - XM_043763020.1 Ecan3g00238 238
3 2694409 2696903 + XM_043763025.1 Ecan3g00241 241
3 2698248 2700922 - XM_043763027.1 Ecan3g00242 242
6 116830130 116833553 + evm.model.ctg633.4 Enbr6g03204 3204
6 116871927 116878358 - evm.model.ctg633.6 Enbr6g03206 3206
6 116880092 116889850 - evm.model.ctg633.7 Enbr6g03207 3207
6 116900870 116909232 + evm.model.ctg633.8 Enbr6g03208 3208
6 117142232 117143720 - evm.model.ctg476.7 Enbr6g03215 3215
6 117204716 117206246 + evm.model.ctg476.5 Enbr6g03216 3216
6 117207744 117213208 - evm.model.ctg476.4 Enbr6g03217 3217
1 10178107 10182887 + FliAMIRv0_Chr01g0004961 Fli1g00501 501
1 10193581 10194894 - FliAMIRv0_Chr01g0004981 Fli1g00503 503
1 10308331 10312444 - FliAMIRv0_Chr01g0005001 Fli1g00505 505
1 10409938 10414063 + FliAMIRv0_Chr01g0005051 Fli1g00510 510
1 10415434 10418107 - FliAMIRv0_Chr01g0005061 Fli1g00511 511
11 77245385 77248274 + FraAMIRv0_Chr11g0223711 Fra11g02349 2349
11 77249926 77253985 - FraAMIRv0_Chr11g0223721 Fra11g02350 2350
11 77299877 77303998 + FraAMIRv0_Chr11g0223761 Fra11g02354 2354
11 77325812 77327122 - FraAMIRv0_Chr11g0223781 Fra11g02356 2356
12 29136115 29139242 + FroAMIRv0_Chr12g0217201 Fro12g02172 2172
12 29145181 29149285 - FroAMIRv0_Chr12g0217211 Fro12g02173 2173
12 29177341 29182832 + FroAMIRv0_Chr12g0217241 Fro12g02176 2176
12 29210772 29212079 - FroAMIRv0_Chr12g0217261 Fro12g02178 2178
12 29237148 29242170 - FroAMIRv0_Chr12g0217291 Fro12g02181 2181
2 5898584 5903293 + FsoAMIRv0_Chr02g0032611 Fso2g00442 442
2 5908660 5908953 - FsoAMIRv0_Chr02g0032621 Fso2g00443 443
2 5950708 5955037 + FsoAMIRv0_Chr02g0032651 Fso2g00446 446
2 5956292 5959325 - FsoAMIRv0_Chr02g0032661 Fso2g00447 447
4 117653212 117656062 + FtrAMIRv0_Chr04g0129131 Ftr4g03479 3479
4 117657223 117661276 - FtrAMIRv0_Chr04g0129141 Ftr4g03480 3480
4 117796812 117797339 + FtrAMIRv0_Chr04g0129201 Ftr4g03486 3486
4 117866207 117867298 - FtrAMIRv0_Chr04g0129241 Ftr4g03490 3490
3 97659066 97659961 + GcoAMIRv0_Chr03g0171391 Glco3g01510 1510
3 97938706 97940001 - GcoAMIRv0_Chr03g0171431 Glco3g01514 1514
3 98002207 98005512 - GcoAMIRv0_Chr03g0171461 Glco3g01517 1517
3 98107366 98113729 - GcoAMIRv0_Chr03g0171471 Glco3g01518 1518
3 98262609 98271960 + GcoAMIRv0_Chr03g0171481 Glco3g01519 1519
3 99182046 99191399 + GcoAMIRv0_Chr03g0171571 Glco3g01528 1528
3 99298534 99304818 + GcoAMIRv0_Chr03g0171581 Glco3g01529 1529
3 99306213 99308469 - GcoAMIRv0_Chr03g0171591 Glco3g01530 1530
6 103301735 103309858 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr06g0271231 Hean6g02879 2879
11 47489395 47492713 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484221 Hean11g01558 1558
11 47496708 47502358 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484231 Hean11g01559 1559
11 47599965 47611898 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484271 Hean11g01563 1563
11 47613770 47619408 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484291 Hean11g01564 1564
11 47772597 47780892 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484311 Hean11g01566 1566
11 48018037 48019368 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484361 Hean11g01570 1570
11 48110152 48114605 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484411 Hean11g01574 1574
16 124388636 124397697 - >Htub.h1tg000461l.g437.t1 Hetu16g02401 2401
17 117422888 117431551 - >Htub.h2tg000417l.g132.t1 Hetu17g02305 2305
18 123381309 123394536 - >Htub.h1tg000740l.g13.t1 Hetu18g02584 2584
31 41614253 41617374 + >Htub.h1tg002121l.g166.t1 Hetu31g00934 934
31 41954781 41963079 - >Htub.h1tg002121l.g172.t1 Hetu31g00940 940
31 42002579 42007215 - >Htub.h1tg002121l.g174.t1 Hetu31g00942 942
31 42010242 42022593 - >Htub.h1tg002121l.g175.t1 Hetu31g00943 943
31 42177601 42182972 + >Htub.h1tg002121l.g177.t1 Hetu31g00945 945
31 42184758 42187536 - >Htub.h1tg002121l.g178.t1 Hetu31g00946 946
33 44280177 44283823 + >Htub.h1tg001052l.g317.t1 Hetu33g01047 1047
33 44643344 44651313 - >Htub.h1tg001052l.g299.t1 Hetu33g01064 1064
33 44699947 44702855 - >Htub.h1tg001052l.g297.t1 Hetu33g01066 1066
33 44711526 44724179 - >Htub.h1tg001052l.g295.t1 Hetu33g01067 1067
33 44862767 44868351 + >Htub.h1tg001052l.g292.t1 Hetu33g01070 1070
33 44870139 44872716 - >Htub.h1tg001052l.g291.t1 Hetu33g01071 1071
7 145296148 145300319 + CAI9295268.1 Laca7g03071 3071
7 145376722 145377972 + CAI9295270.1 Laca7g03073 3073
7 145412722 145417319 - CAI9295272.1 Laca7g03074 3074
7 145440681 145446004 - CAI9295273.1 Laca7g03075 3075
7 145451138 145457958 - CAI9295275.1 Laca7g03076 3076
7 145496852 145506663 + CAI9295276.1 Laca7g03077 3077
7 145510457 145514281 + CAI9295278.1 Laca7g03078 3078
1 3977305 3980705 + LmiAMIRv0_Chr01g0004371 Lomi1g00437 437
1 4003922 4007036 - LmiAMIRv0_Chr01g0004381 Lomi1g00438 438
1 4011707 4016263 - LmiAMIRv0_Chr01g0004391 Lomi1g00439 439
1 4019637 4026774 - LmiAMIRv0_Chr01g0004401 Lomi1g00440 440
1 4030134 4037616 + LmiAMIRv0_Chr01g0004411 Lomi1g00441 441
1 4046745 4048944 + LmiAMIRv0_Chr01g0004431 Lomi1g00443 443
1 4050713 4053007 - LmiAMIRv0_Chr01g0004441 Lomi1g00444 444
2 47515100 47516818 + LmiAMIRv0_Chr02g0087331 Lomi2g04200 4200
2 47517847 47521109 - LmiAMIRv0_Chr02g0087341 Lomi2g04201 4201
2 47524076 47531401 - LmiAMIRv0_Chr02g0087351 Lomi2g04202 4202
2 47535911 47544537 + LmiAMIRv0_Chr02g0087361 Lomi2g04203 4203
2 47551519 47556794 + LmiAMIRv0_Chr02g0087381 Lomi2g04205 4205
2 47560918 47564591 + LmiAMIRv0_Chr02g0087391 Lomi2g04206 4206
2 47573289 47574677 - LmiAMIRv0_Chr02g0087401 Lomi2g04207 4207
2 47585106 47587079 - LmiAMIRv0_Chr02g0087421 Lomi2g04209 4209
7 197496279 197501050 + >KAJ0194661.1 Lssa7g03756 3756
7 198382828 198384105 + >KAJ0196154.1 Lssa7g03759 3759
7 198430536 198441154 - >KAJ0197635.1 Lssa7g03760 3760
7 198456656 198460345 - >KAJ0195108.1 Lssa7g03761 3761
7 198471809 198478738 - >KAJ0196610.1 Lssa7g03762 3762
7 198510063 198513127 + >KAJ0197057.1 Lssa7g03765 3765
7 198518599 198522030 + >KAJ0198470.1 Lssa7g03766 3766
7 198543764 198545612 - >KAJ0197002.1 Lssa7g03767 3767
17 39782128 39813533 + KAD3067064.1 Mimi17g00742 742
17 40271972 40280205 - KAD3067070.1 Mimi17g00748 748
17 40626588 40633360 - KAD3067077.1 Mimi17g00755 755
17 40833688 40840147 - KAD3067078.1 Mimi17g00756 756
4 14459045 14460460 - PdyAMIRv0_Chr04g0156231 Pdy4g00816 816
4 14596963 14601670 - PdyAMIRv0_Chr04g0156321 Pdy4g00825 825
4 14637515 14649611 - PdyAMIRv0_Chr04g0156331 Pdy4g00826 826
4 14690765 14710389 + PdyAMIRv0_Chr04g0156361 Pdy4g00829 829
4 14716612 14727350 + PdyAMIRv0_Chr04g0156371 Pdy4g00830 830
4 14731582 14735201 - PdyAMIRv0_Chr04g0156381 Pdy4g00831 831
1 149654211 149655864 + PluAMIRv0_Chr01g0206571 Pslu1g20748 20748
1 149656786 149660172 - PluAMIRv0_Chr01g0206581 Pslu1g20749 20749
1 149738722 149745929 - PluAMIRv0_Chr01g0206651 Pslu1g20756 20756
1 149750516 149758487 + PluAMIRv0_Chr01g0206661 Pslu1g20757 20757
1 149761516 149765846 + PluAMIRv0_Chr01g0206671 Pslu1g20758 20758
1 149780005 149783727 + PluAMIRv0_Chr01g0206701 Pslu1g20761 20761
1 149817067 149818434 - PluAMIRv0_Chr01g0206751 Pslu1g20766 20766
1 149823041 149824438 + PluAMIRv0_Chr01g0206761 Pslu1g20767 20767
1 149910267 149915305 - PluAMIRv0_Chr01g0206991 Pslu1g20791 20791
12 915371 919571 - SinAMIRv0_Chr12g0356411 Sain12g00076 76
12 927500 932585 - SinAMIRv0_Chr12g0356421 Sain12g00077 77
12 962172 986332 - SinAMIRv0_Chr12g0356451 Sain12g00080 80
12 1045391 1056548 + SinAMIRv0_Chr12g0356471 Sain12g00082 82
12 1057880 1066329 + SinAMIRv0_Chr12g0356481 Sain12g00083 83
12 1067630 1069898 - SinAMIRv0_Chr12g0356491 Sain12g00084 84
7 7996675 8001678 + KAI3810055.1 Smso7g00475 475
7 8054571 8055926 - KAI3810059.1 Smso7g00479 479
7 8084398 8090620 - KAI3810060.1 Smso7g00480 480
7 8100395 8104638 - KAI3810062.1 Smso7g00482 482
7 8120618 8130734 - KAI3810064.1 Smso7g00484 484
7 8174139 8176444 + KAI3810068.1 Smso7g00488 488
7 8181599 8184208 - KAI3810069.1 Smso7g00489 489
29 8904363 8913098 + KAI3675620.1 Smso29g00626 626
29 8933984 8935414 - KAI3675622.1 Smso29g00628 628
29 8948137 8953631 - KAI3675623.1 Smso29g00629 629
29 8969032 8970411 - KAI3675625.1 Smso29g00631 631
29 8975154 8990406 - KAI3675626.1 Smso29g00632 632
29 9014862 9020047 + KAI3675629.1 Smso29g00635 635
29 9024288 9026585 - KAI3675631.1 Smso29g00637 637
5 74089859 74093057 + augustus35988.t02 Soca5g05382 5382
5 74131645 74136725 - augustus35993.t02 Soca5g05385 5385
5 74140080 74149924 - transfrag23936.t01 Soca5g05386 5386
5 74171702 74181761 + transfrag23937.t01 Soca5g05387 5387
5 74188010 74193286 + asmbl_4254.p1 Soca5g05389 5389
5 74220190 74224575 + augustus36000.t01 Soca5g05390 5390
5 74247777 74249063 + augustus36004.t01 Soca5g05393 5393
5 74251161 74256227 - transfrag23946.t01 Soca5g05394 5394
6 19478132 19483272 + Streb.6G006760.1 Stre6g00676 676
6 19488460 19489740 - Streb.6G006770.1 Stre6g00677 677
6 19568910 19576267 - Streb.6G006800.1 Stre6g00680 680
6 19775444 19780212 - Streb.6G006810.1 Stre6g00681 681
6 19969177 19974120 + Streb.6G006890.1 Stre6g00689 689
6 19976166 19978858 - Streb.6G006900.1 Stre6g00690 690
1 53264879 53271183 + >KAK1440076.1 Taer1g05901 5901
1 53280322 53281608 - >KAK1440078.1 Taer1g05903 5903
1 53300749 53301825 - >KAK1440081.1 Taer1g05906 5906
1 53354214 53357352 + >KAK1440087.1 Taer1g05912 5912
1 53359933 53361804 - >KAK1440088.1 Taer1g05913 5913
4 53779097 53784094 - TkA04G209970.1 Tako4g02944 2944
4 58146736 58151277 + TkA04G228690.2 Tako4g03012 3012
4 72928511 72933055 + TkA04G287780.5 Tako4g03410 3410
4 73153286 73157622 + TkA04G288550.1 Tako4g03413 3413
4 73172228 73173022 - TkA04G288620.1 Tako4g03414 3414
4 75453984 75458796 - TkA04G298230.1 Tako4g03457 3457
4 34165085 34172013 + TbA04G053080.1 Tamo4g02107 2107
4 34172995 34177845 + TbA04G053070.1 Tamo4g02108 2108
4 34360377 34362471 - TbA04G052830.1 Tamo4g02114 2114
       
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