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AGRP

Asteraceae Genomic Research Platform

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Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00082 Sain12g00085 Ceso2g03204 Cati3g00106 Ccar2g02327 Cien5g03526 Cich4g04845 Lssa7g03768 . Tako4g02940 . Pslu1g20747 Lomi1g00445 Lomi2g04199 Enbr6g03203 Ecan3g00226 Soca5g05380 Glco3g01531 . . . . Chma7g07452 Chmo13g01105 . Chmo15g00972 . Chna2g00943 Cind3g02058 Pdy4g00833 . . . . . . . . . . . . . . . . . . . . Cobi4g02813 Hean11g01557 Bial4g03035 Bial16g02464 . . . Hetu31g00947 Hetu33g01073 Amtr02g06575 Smso7g00490 Smso29g00638 Taer1g05914 Fro12g02171 Fso2g00448 Ftr4g03478 Fra11g02348 Fli1g00512 . .
Armi1g00083 Sain12g00086 Ceso2g03205 Cati3g00108 Ccar2g02326 Cien5g03527 Cich4g04846 Lssa7g03769 Laca7g03079 Tako4g03022 Tamo4g02117 Pslu1g20746 Lomi1g00447 Lomi2g04198 . Ecan3g00224 Soca5g05378 Glco3g01533 . . . Aann4g00769 Chma7g07457 Chmo13g01107 Chmo14g01027 Chmo15g00973 Chla6g05641 Chna2g00945 Cind3g02056 Pdy4g00834 . Hean6g02881 . . . . . . . . . Smso26g01730 . . . . . . Stre9g01544 . Cobi4g02810 Hean11g01554 Bial4g03031 Bial16g02458 . Dapi23g00571 . . . . . . . . . . . . . .
. . . . Ccar2g02265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00084 Sain12g00087 Ceso2g03206 Cati3g00116 Ccar2g02325 Cien5g03528 . Lssa7g03770 Laca7g03081 Tako4g03024 Tamo4g02119 Pslu1g20744 Lomi1g00448 Lomi2g04197 Enbr6g03173 Ecan3g00216 Soca5g05375 . Artr3g10786 . . Aann4g00763 Chma7g07477 Chmo13g01110 Chmo14g01030 Chmo15g00976 Chla6g05640 Chna2g00949 Cind3g02053 Pdy4g00842 . . . . . . . . . . . . . . . . . . . . Cobi4g02809 Hean11g01549 Bial4g03027 Bial16g02454 Dapi7g00553 Dapi23g00574 . Hetu31g00953 Hetu33g01077 Amtr02g06574 Smso7g00492 Smso29g00639 . . . . . . Stre6g00694 .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . Cati3g00117 Ccar2g02324 Cien5g03529 . Lssa7g03771 Laca7g03082 Tako4g03025 . Pslu1g20743 Lomi1g00449 Lomi2g04196 Enbr6g03172 Ecan3g00215 . . Artr3g10785 . . Aann4g00762 Chma7g07478 Chmo13g01111 . Chmo15g00977 Chla6g05639 Chna2g00950 Cind3g02052 . . Hean6g02885 . . . . . . . . . Smso26g01732 . . . . . . Stre9g01545 . Cobi4g02808 Hean11g01548 . . Dapi7g00554 Dapi23g00575 . Hetu31g00954 Hetu33g01079 Amtr02g06573 Smso7g00493 Smso29g00640 Taer1g05917 Fro12g02168 Fso2g00451 Ftr4g03473 Fra11g02345 Fli1g00513 Stre6g00695 .
Armi1g00086 Sain12g00088 Ceso2g03208 Cati3g00118 Ccar2g02323 Cien5g03531 Cich4g04847 Lssa7g03772 Laca7g03083 Tako4g03028 . Pslu1g20742 . Lomi2g04193 . Ecan3g00214 Soca5g05373 . Artr3g10782 . . Aann4g00761 Chma7g07479 Chmo13g01112 Chmo14g01031 Chmo15g00980 Chla6g05637 Chna2g00951 Cind3g02051 Pdy4g00848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00088 Sain12g00089 . Cati3g00119 Ccar2g02322 Cien5g03532 . Lssa7g03773 Laca7g03084 Tako4g03031 . Pslu1g20741 Lomi1g00450 Lomi2g04192 Enbr6g03171 Ecan3g00213 Soca5g05372 Glco3g01538 Artr3g10781 . . Aann4g00760 Chma7g07480 . . . Chla6g05636 Chna2g00952 Cind3g02050 . . . . . . . . . . . . . . . . . . . . . Cobi4g02807 Hean11g01547 Bial4g03026 Bial16g02453 Dapi7g00555 Dapi23g00576 . . . Amtr02g06572 Smso7g00494 Smso29g00641 Taer1g05918 Fro12g02167 Fso2g00452 . Fra11g02344 Fli1g00514 Stre6g00696 .
Armi1g00089 Sain12g00090 Ceso2g03209 Cati3g00120 Ccar2g02321 Cien5g03533 . Lssa7g03774 Laca7g03085 Tako4g03032 Tamo4g02121 Pslu1g20740 Lomi1g00451 Lomi2g04191 Enbr6g03166 Ecan3g00211 Soca5g05371 Glco3g01539 Artr3g10780 . . Aann4g00759 Chma7g07481 Chmo13g01114 Chmo14g01033 Chmo15g00982 Chla6g05635 Chna2g00953 Cind3g02049 Pdy4g00849 . . . . . . . . . . . . . . . . . . . . Cobi4g02806 Hean11g01546 Bial4g03025 Bial16g02452 Dapi7g00556 Dapi23g00577 . Hetu31g00957 Hetu33g01081 Amtr02g06571 Smso7g00495 Smso29g00642 Taer1g05919 Fro12g02166 Fso2g00453 . Fra11g02343 Fli1g00515 Stre6g00697 .
Armi1g00090 Sain12g00092 Ceso2g03210 Cati3g00121 Ccar2g02320 Cien5g03534 Cich4g04848 Lssa7g03775 . Tako4g03033 Tamo4g02122 Pslu1g20732 Lomi1g00452 Lomi2g04190 Enbr6g03165 Ecan3g00210 Soca5g05368 Glco3g01542 Artr3g10774 . . Aann4g00756 Chma7g07483 Chmo13g01116 Chmo14g01035 Chmo15g00984 Chla6g05632 Chna2g00954 Cind3g02046 Pdy4g00850 . . . . . . . . . . . . . . . . . . . . Cobi4g02805 Hean11g01545 Bial4g03024 Bial16g02451 . . . Hetu31g00958 Hetu33g01082 . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 49744991 49750517 + chr4g0766301 Aann4g00756 756
4 49824846 49826231 + chr4g0766331 Aann4g00759 759
4 49826253 49832383 - chr4g0766341 Aann4g00760 760
4 49833374 49836551 - chr4g0766351 Aann4g00761 761
4 49838068 49839245 + chr4g0766361 Aann4g00762 762
4 49839673 49843997 - chr4g0766371 Aann4g00763 763
4 49879906 49885704 + chr4g0766451 Aann4g00769 769
2 119204547 119205823 + AtrifAMIRv0_Chr02g0161671 Amtr02g06571 6571
2 119206165 119211931 - AtrifAMIRv0_Chr02g0161681 Amtr02g06572 6572
2 119214770 119215838 + AtrifAMIRv0_Chr02g0161691 Amtr02g06573 6573
2 119216253 119219326 - AtrifAMIRv0_Chr02g0161701 Amtr02g06574 6574
2 119288475 119289928 - AtrifAMIRv0_Chr02g0161711 Amtr02g06575 6575
1 1275850 1278018 + AmiAMIRv0_Chr01g0000821 Armi1g00082 82
1 1279060 1289049 - AmiAMIRv0_Chr01g0000831 Armi1g00083 83
1 1333734 1336566 + AmiAMIRv0_Chr01g0000841 Armi1g00084 84
1 1342047 1343123 + AmiAMIRv0_Chr01g0000861 Armi1g00086 86
1 1384678 1392478 + AmiAMIRv0_Chr01g0000881 Armi1g00088 88
1 1392982 1395297 - AmiAMIRv0_Chr01g0000891 Armi1g00089 89
1 1396880 1402256 - AmiAMIRv0_Chr01g0000901 Armi1g00090 90
3 363333130 363336017 + AtridAMIRv0_Chr03g0415101 Artr3g10774 10774
3 363513065 363514732 + AtridAMIRv0_Chr03g0415161 Artr3g10780 10780
3 363514900 363520512 - AtridAMIRv0_Chr03g0415171 Artr3g10781 10781
3 363522773 363525118 - AtridAMIRv0_Chr03g0415181 Artr3g10782 10782
3 363595286 363596763 + AtridAMIRv0_Chr03g0415211 Artr3g10785 10785
3 363597168 363600914 - AtridAMIRv0_Chr03g0415221 Artr3g10786 10786
4 69259589 69261972 + g42863.t1 Bial4g03024 3024
4 69265084 69266086 + g42864.t1 Bial4g03025 3025
4 69266444 69270617 - g42865.t1 Bial4g03026 3026
4 69275607 69279413 - g42866.t1 Bial4g03027 3027
4 69360505 69366337 + g42870.t1 Bial4g03031 3031
4 69473653 69476010 - g42874.t1 Bial4g03035 3035
16 63947331 63950824 + g150131.t1 Bial16g02451 2451
16 63953723 63954725 + g150130.t1 Bial16g02452 2452
16 63955081 63959292 - g150129.t1 Bial16g02453 2453
16 63965535 63968687 - g150128.t1 Bial16g02454 2454
16 64026819 64037926 + g150124.t1 Bial16g02458 2458
16 64111951 64114723 - g150118.t1 Bial16g02464 2464
3 529212 532408 + CtAH03T0005700.1 Cati3g00106 106
3 532909 556544 - CtAH03T0005800.2 Cati3g00108 108
3 566385 572495 + CtAH03T0006100.1 Cati3g00116 116
3 570977 572667 - CtAH03T0006200.1 Cati3g00117 117
3 575296 577752 + CtAH03T0006300.1 Cati3g00118 118
3 582371 591677 + CtAH03T0006400.1 Cati3g00119 119
3 592700 594954 - CtAH03T0006500.1 Cati3g00120 120
3 596962 600419 - CtAH03T0006600.1 Cati3g00121 121
2 69663059 69665938 + gnl|WGS:LEKV|Ccrd_011316.mRNA.1_mrna Ccar2g02265 2265
2 70388602 70393142 + gnl|WGS:LEKV|Ccrd_011371.mRNA.1_mrna Ccar2g02320 2320
2 70393823 70405453 + gnl|WGS:LEKV|Ccrd_011372.mRNA.1_mrna Ccar2g02321 2321
2 70395922 70405409 - gnl|WGS:LEKV|Ccrd_011373.mRNA.1_mrna Ccar2g02322 2322
2 70407577 70410044 - gnl|WGS:LEKV|Ccrd_011374.mRNA.1_mrna Ccar2g02323 2323
2 70414811 70416209 + gnl|WGS:LEKV|Ccrd_011375.mRNA.1_mrna Ccar2g02324 2324
2 70416754 70420220 - gnl|WGS:LEKV|Ccrd_011376.mRNA.1_mrna Ccar2g02325 2325
2 70425883 70438440 + gnl|WGS:LEKV|Ccrd_011377.mRNA.1_mrna Ccar2g02326 2326
2 70439055 70440810 - gnl|WGS:LEKV|Ccrd_011378.mRNA.1_mrna Ccar2g02327 2327
2 80879540 80881382 + >KAJ9562976.1 Ceso2g03204 3204
2 80898044 80907853 - >KAJ9562689.1 Ceso2g03205 3205
2 80936826 80940601 + >KAJ9562685.1 Ceso2g03206 3206
2 80946214 80948927 + >KAJ9562690.1 Ceso2g03208 3208
2 80960312 80961891 - >KAJ9562686.1 Ceso2g03209 3209
2 80963738 80967405 - >KAJ9562687.1 Ceso2g03210 3210
6 223377882 223380981 + ClaG1_Chr06g0428791 Chla6g05632 5632
6 223436582 223438462 + ClaG1_Chr06g0428821 Chla6g05635 5635
6 223438469 223444296 - ClaG1_Chr06g0428831 Chla6g05636 5636
6 223448841 223451296 - ClaG1_Chr06g0428841 Chla6g05637 5637
6 223472170 223474523 + ClaG1_Chr06g0428861 Chla6g05639 5639
6 223474923 223478846 - ClaG1_Chr06g0428871 Chla6g05640 5640
6 223495942 223502990 + ClaG1_Chr06g0428881 Chla6g05641 5641
7 255653757 255656485 + CmaNakai_Chr07g0697541 Chma7g07452 7452
7 255730982 255738621 - CmaNakai_Chr07g0697591 Chma7g07457 7457
7 257152754 257156293 + CmaNakai_Chr07g0697791 Chma7g07477 7477
7 257156690 257159109 - CmaNakai_Chr07g0697801 Chma7g07478 7478
7 257160491 257163476 + CmaNakai_Chr07g0697811 Chma7g07479 7479
7 257170334 257176333 + CmaNakai_Chr07g0697821 Chma7g07480 7480
7 257176803 257177997 - CmaNakai_Chr07g0697831 Chma7g07481 7481
7 257221621 257224916 - CmaNakai_Chr07g0697851 Chma7g07483 7483
13 57003234 57006522 + evm.model.scaffold_1239.70 Chmo13g01105 1105
13 57015389 57020410 - evm.model.scaffold_1239.68 Chmo13g01107 1107
13 57154521 57158632 + evm.model.scaffold_1239.63 Chmo13g01110 1110
13 57159028 57160113 - evm.model.scaffold_1239.62 Chmo13g01111 1111
13 57163480 57166168 + evm.model.scaffold_1239.61 Chmo13g01112 1112
13 57178003 57179805 - evm.model.scaffold_1239.59 Chmo13g01114 1114
13 57306403 57310152 - evm.model.scaffold_1239.53 Chmo13g01116 1116
14 51515262 51540251 - evm.model.scaffold_490.18.2 Chmo14g01027 1027
14 51814509 51818341 + evm.model.scaffold_490.9 Chmo14g01030 1030
14 51822138 51824513 + evm.model.scaffold_490.7 Chmo14g01031 1031
14 51836174 51837910 - evm.model.scaffold_490.4 Chmo14g01033 1033
14 51881020 51884525 - evm.model.scaffold_490.1 Chmo14g01035 1035
15 56530938 56533806 + evm.model.scaffold_1049.132 Chmo15g00972 972
15 56537167 56537925 - evm.model.scaffold_1049.134 Chmo15g00973 973
15 56780925 56784714 + evm.model.scaffold_1049.142 Chmo15g00976 976
15 56785100 56787789 - evm.model.scaffold_1049.143 Chmo15g00977 977
15 56826071 56828431 + evm.model.scaffold_1049.146 Chmo15g00980 980
15 56844343 56846003 - evm.model.scaffold_1049.148 Chmo15g00982 982
15 56883442 56887088 - evm.model.scaffold_1049.150 Chmo15g00984 984
2 72064746 72066054 + Cn1274840 Chna2g00943 943
2 72126737 72131039 - Cn1274820 Chna2g00945 945
2 72215557 72219910 + Cn1274750 Chna2g00949 949
2 72220091 72221380 - Cn1274740 Chna2g00950 950
2 72236399 72238759 + Cn1274720 Chna2g00951 951
2 72245423 72251395 + Cn1274710 Chna2g00952 952
2 72251631 72252974 - Cn1274700 Chna2g00953 953
2 72504201 72507735 - Cn1274690 Chna2g00954 954
4 137193415 137194624 + KAI3753980.1 Cich4g04845 4845
4 137195104 137199308 - KAI3753981.1 Cich4g04846 4846
4 137220479 137222932 + KAI3753982.1 Cich4g04847 4847
4 137242558 137245524 - KAI3753983.1 Cich4g04848 4848
5 81178920 81180068 + KAI3510046.1 Cien5g03526 3526
5 81180552 81184707 - KAI3510047.1 Cien5g03527 3527
5 81190069 81192688 + KAI3510048.1 Cien5g03528 3528
5 81193013 81193978 - KAI3510049.1 Cien5g03529 3529
5 81197039 81199492 + KAI3510051.1 Cien5g03531 3531
5 81204748 81209080 + KAI3510052.1 Cien5g03532 3532
5 81209396 81210262 - KAI3510053.1 Cien5g03533 3533
5 81210298 81213926 - KAI3510054.1 Cien5g03534 3534
3 311216357 311220314 + D.indicum_Contig21_G00090.t1 Cind3g02046 2046
3 311296706 311297960 + D.indicum_Contig21_G00093.t1 Cind3g02049 2049
3 311298444 311303824 - D.indicum_Contig21_G00094.t1 Cind3g02050 2050
3 311310400 311312760 - D.indicum_Contig21_G00095.t1 Cind3g02051 2051
3 311313369 311318015 + D.indicum_Contig21_G00096.t1 Cind3g02052 2052
3 311318418 311322312 - D.indicum_Contig21_G00097.t1 Cind3g02053 2053
3 311402623 311406241 + D.indicum_Contig21_G00100.t1 Cind3g02056 2056
3 311610189 311613198 - D.indicum_Contig21_G00102.t1 Cind3g02058 2058
4 75720008 75722982 + h2tg000009l_1.g42474.t1 Cobi4g02805 2805
4 75728246 75729104 + h2tg000009l_1.g42473.t1 Cobi4g02806 2806
4 75729429 75734459 - h2tg000009l_1.g42472.t1 Cobi4g02807 2807
4 75737994 75739122 + h2tg000009l_1.g42471.t1 Cobi4g02808 2808
4 75739550 75742952 - h2tg000009l_1.g42470.t1 Cobi4g02809 2809
4 75764094 75771266 + h2tg000009l_1.g42469.t1 Cobi4g02810 2810
4 75884662 75886425 - h2tg000009l_1.g42466.t1 Cobi4g02813 2813
7 11930070 11932865 + h1tg000030l.g77143.t1 Dapi7g00553 553
7 11933273 11934370 - h1tg000030l.g77144.t1 Dapi7g00554 554
7 11937579 11942945 + h1tg000030l.g77145.t1 Dapi7g00555 555
7 11943279 11944167 - h1tg000030l.g77146.t1 Dapi7g00556 556
23 12671678 12673207 - h2tg000020l.g165128.t1 Dapi23g00571 571
23 12735482 12738244 + h2tg000020l.g165125.t1 Dapi23g00574 574
23 12738650 12739779 - h2tg000020l.g165124.t1 Dapi23g00575 575
23 12786509 12791725 + h2tg000020l.g165123.t1 Dapi23g00576 576
23 12792054 12792941 - h2tg000020l.g165122.t1 Dapi23g00577 577
3 2334277 2335785 + XM_043766786.1 Ecan3g00210 210
3 2337893 2339369 + XM_043764788.1 Ecan3g00211 211
3 2350078 2356411 - XM_043766382.1 Ecan3g00213 213
3 2361910 2364503 - XM_043765704.1 Ecan3g00214 214
3 2367563 2368937 + XM_043763006.1 Ecan3g00215 215
3 2369037 2371839 - XM_043766490.1 Ecan3g00216 216
3 2547936 2554540 + XM_043763424.1 Ecan3g00224 224
3 2561758 2563479 - XM_043765756.1 Ecan3g00226 226
6 115854570 115857209 + evm.model.ctg1851.16 Enbr6g03165 3165
6 115859300 115860506 + evm.model.ctg1851.17 Enbr6g03166 3166
6 115921822 115927784 - evm.model.ctg1851.22 Enbr6g03171 3171
6 115940987 115942114 + evm.model.ctg1851.24 Enbr6g03172 3172
6 115942588 115944970 - evm.model.ctg1851.25 Enbr6g03173 3173
6 116826672 116828340 - evm.model.ctg633.3 Enbr6g03203 3203
1 10421438 10433314 + FliAMIRv0_Chr01g0005071 Fli1g00512 512
1 10538476 10539746 - FliAMIRv0_Chr01g0005081 Fli1g00513 513
1 10555904 10561151 + FliAMIRv0_Chr01g0005091 Fli1g00514 514
1 10561508 10562382 - FliAMIRv0_Chr01g0005101 Fli1g00515 515
11 77202586 77203480 + FraAMIRv0_Chr11g0223651 Fra11g02343 2343
11 77203844 77209144 - FraAMIRv0_Chr11g0223661 Fra11g02344 2344
11 77214418 77215721 + FraAMIRv0_Chr11g0223671 Fra11g02345 2345
11 77241864 77243857 - FraAMIRv0_Chr11g0223701 Fra11g02348 2348
12 29098525 29099437 + FroAMIRv0_Chr12g0217141 Fro12g02166 2166
12 29099800 29105647 - FroAMIRv0_Chr12g0217151 Fro12g02167 2167
12 29111755 29112943 + FroAMIRv0_Chr12g0217161 Fro12g02168 2168
12 29132532 29134816 - FroAMIRv0_Chr12g0217191 Fro12g02171 2171
2 5964401 5967098 + FsoAMIRv0_Chr02g0032671 Fso2g00448 448
2 5995307 5996577 - FsoAMIRv0_Chr02g0032701 Fso2g00451 451
2 6001962 6007307 + FsoAMIRv0_Chr02g0032711 Fso2g00452 452
2 6007674 6008554 - FsoAMIRv0_Chr02g0032721 Fso2g00453 453
4 117626517 117627733 + FtrAMIRv0_Chr04g0129071 Ftr4g03473 3473
4 117649790 117652069 - FtrAMIRv0_Chr04g0129121 Ftr4g03478 3478
3 99325840 99328574 + GcoAMIRv0_Chr03g0171601 Glco3g01531 1531
3 99343507 99347082 - GcoAMIRv0_Chr03g0171621 Glco3g01533 1533
3 99553567 99558842 + GcoAMIRv0_Chr03g0171671 Glco3g01538 1538
3 99559286 99560482 - GcoAMIRv0_Chr03g0171681 Glco3g01539 1539
3 99622937 99625843 - GcoAMIRv0_Chr03g0171711 Glco3g01542 1542
6 103317101 103320856 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr06g0271251 Hean6g02881 2881
6 103398912 103400344 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr06g0271291 Hean6g02885 2885
11 47147423 47148146 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484081 Hean11g01545 1545
11 47177238 47179374 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484101 Hean11g01546 1546
11 47178497 47184297 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484111 Hean11g01547 1547
11 47187435 47188970 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484121 Hean11g01548 1548
11 47188263 47193032 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484131 Hean11g01549 1549
11 47358455 47365028 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484181 Hean11g01554 1554
11 47376576 47379950 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0484211 Hean11g01557 1557
31 42266052 42268593 + >Htub.h1tg002121l.g179.t1 Hetu31g00947 947
31 42637701 42641607 + >Htub.h1tg002121l.g185.t1 Hetu31g00953 953
31 42642009 42642988 - >Htub.h1tg002121l.g186.t1 Hetu31g00954 954
31 42659546 42660417 - >Htub.h1tg002121l.g189.t1 Hetu31g00957 957
31 42739437 42743307 - >Htub.h1tg002121l.g190.t1 Hetu31g00958 958
33 44914758 44917455 + >Htub.h1tg001052l.g289.t1 Hetu33g01073 1073
33 45132692 45135564 + >Htub.h1tg001052l.g285.t1 Hetu33g01077 1077
33 45148604 45149582 - >Htub.h1tg001052l.g283.t1 Hetu33g01079 1079
33 45161525 45162407 - >Htub.h1tg001052l.g281.t1 Hetu33g01081 1081
33 45228153 45237621 - >Htub.h1tg001052l.g280.t1 Hetu33g01082 1082
7 145527924 145532288 - CAI9295279.1 Laca7g03079 3079
7 145549846 145554561 + CAI9295281.1 Laca7g03081 3081
7 145554841 145555945 - CAI9295282.1 Laca7g03082 3082
7 145564553 145566991 + CAI9295283.1 Laca7g03083 3083
7 145587886 145593156 + CAI9295284.1 Laca7g03084 3084
7 145593022 145594417 - CAI9295285.1 Laca7g03085 3085
1 4055001 4056110 + LmiAMIRv0_Chr01g0004451 Lomi1g00445 445
1 4066615 4067444 - LmiAMIRv0_Chr01g0004471 Lomi1g00447 447
1 4071189 4073493 + LmiAMIRv0_Chr01g0004481 Lomi1g00448 448
1 4073985 4075200 - LmiAMIRv0_Chr01g0004491 Lomi1g00449 449
1 4084931 4090581 + LmiAMIRv0_Chr01g0004501 Lomi1g00450 450
1 4091093 4091981 - LmiAMIRv0_Chr01g0004511 Lomi1g00451 451
1 4096186 4098758 - LmiAMIRv0_Chr01g0004521 Lomi1g00452 452
2 47459907 47462685 + LmiAMIRv0_Chr02g0087231 Lomi2g04190 4190
2 47463789 47464678 + LmiAMIRv0_Chr02g0087241 Lomi2g04191 4191
2 47465191 47470814 - LmiAMIRv0_Chr02g0087251 Lomi2g04192 4192
2 47472301 47474757 - LmiAMIRv0_Chr02g0087261 Lomi2g04193 4193
2 47483732 47484988 + LmiAMIRv0_Chr02g0087291 Lomi2g04196 4196
2 47485494 47487837 - LmiAMIRv0_Chr02g0087301 Lomi2g04197 4197
2 47498282 47504265 + LmiAMIRv0_Chr02g0087311 Lomi2g04198 4198
2 47509818 47511789 - LmiAMIRv0_Chr02g0087321 Lomi2g04199 4199
7 198546728 198547891 + >KAJ0195514.1 Lssa7g03768 3768
7 198547936 198552555 - >KAJ0198019.1 Lssa7g03769 3769
7 198590181 198595413 + >KAJ0196395.1 Lssa7g03770 3770
7 198592850 198593924 - >KAJ0194896.1 Lssa7g03771 3771
7 198598387 198600825 + >KAJ0197435.1 Lssa7g03772 3772
7 198616044 198621373 + >KAJ0195964.1 Lssa7g03773 3773
7 198621288 198622528 - >KAJ0198334.1 Lssa7g03774 3774
7 198623747 198625624 - >KAJ0196862.1 Lssa7g03775 3775
4 14760859 14762186 + PdyAMIRv0_Chr04g0156401 Pdy4g00833 833
4 14762696 14768863 - PdyAMIRv0_Chr04g0156411 Pdy4g00834 834
4 14912437 14914971 + PdyAMIRv0_Chr04g0156491 Pdy4g00842 842
4 15302751 15305207 + PdyAMIRv0_Chr04g0156551 Pdy4g00848 848
4 15314735 15315632 - PdyAMIRv0_Chr04g0156561 Pdy4g00849 849
4 15319787 15322194 - PdyAMIRv0_Chr04g0156571 Pdy4g00850 850
1 149571872 149574299 + PluAMIRv0_Chr01g0206411 Pslu1g20732 20732
1 149597777 149598664 + PluAMIRv0_Chr01g0206491 Pslu1g20740 20740
1 149599154 149604663 - PluAMIRv0_Chr01g0206501 Pslu1g20741 20741
1 149606718 149609174 - PluAMIRv0_Chr01g0206511 Pslu1g20742 20742
1 149611301 149612365 + PluAMIRv0_Chr01g0206521 Pslu1g20743 20743
1 149612868 149615259 - PluAMIRv0_Chr01g0206531 Pslu1g20744 20744
1 149644416 149648847 + PluAMIRv0_Chr01g0206551 Pslu1g20746 20746
1 149649158 149651061 - PluAMIRv0_Chr01g0206561 Pslu1g20747 20747
12 1082518 1085107 + SinAMIRv0_Chr12g0356501 Sain12g00085 85
12 1086346 1093618 - SinAMIRv0_Chr12g0356511 Sain12g00086 86
12 1126253 1128924 + SinAMIRv0_Chr12g0356521 Sain12g00087 87
12 1136634 1139090 + SinAMIRv0_Chr12g0356531 Sain12g00088 88
12 1141201 1152282 + SinAMIRv0_Chr12g0356541 Sain12g00089 89
12 1152754 1154401 - SinAMIRv0_Chr12g0356551 Sain12g00090 90
12 1170247 1176150 - SinAMIRv0_Chr12g0356571 Sain12g00092 92
7 8202211 8203947 + KAI3810070.1 Smso7g00490 490
7 8223735 8226614 + KAI3810072.1 Smso7g00492 492
7 8227033 8228208 - KAI3810073.1 Smso7g00493 493
7 8250078 8255978 + KAI3810074.1 Smso7g00494 494
7 8256181 8257158 - KAI3810075.1 Smso7g00495 495
26 29406956 29412802 - KAI3695215.1 Smso26g01730 1730
26 29519052 29519877 + KAI3695217.1 Smso26g01732 1732
29 9029457 9031181 + KAI3675632.1 Smso29g00638 638
29 9041472 9044516 + KAI3675633.1 Smso29g00639 639
29 9044923 9046173 - KAI3675634.1 Smso29g00640 640
29 9077099 9082859 + KAI3675635.1 Smso29g00641 641
29 9083208 9084104 - KAI3675636.1 Smso29g00642 642
5 73886229 73888290 + augustus35968.t01 Soca5g05368 5368
5 73920515 73922056 + transfrag23921.t01 Soca5g05371 5371
5 73922258 73929669 - transfrag23922.t01 Soca5g05372 5372
5 73934522 73937253 - asmbl_4218.p1 Soca5g05373 5373
5 73970752 73974412 - transfrag23926.t01 Soca5g05375 5375
5 74069141 74077266 + asmbl_4253.p1 Soca5g05378 5378
5 74083166 74086010 - transfrag23931.t01 Soca5g05380 5380
6 20210364 20214968 + Streb.6G006940.1 Stre6g00694 694
6 20214747 20216253 - Streb.6G006950.1 Stre6g00695 695
6 20282573 20287066 + Streb.6G006960.1 Stre6g00696 696
6 20287424 20288434 - Streb.6G006970.1 Stre6g00697 697
9 27102795 27108539 - Streb.9G015440.1 Stre9g01544 1544
9 27109465 27110464 - Streb.9G015450.1 Stre9g01545 1545
1 53362744 53364426 + >KAK1440089.1 Taer1g05914 5914
1 53384346 53385546 - >KAK1440092.1 Taer1g05917 5917
1 53387034 53393600 + >KAK1440093.1 Taer1g05918 5918
1 53393897 53394786 - >KAK1440094.1 Taer1g05919 5919
4 53740800 53742553 + TkA04G209840.1 Tako4g02940 2940
4 58582161 58588598 - TkA04G230650.2 Tako4g03022 3022
4 58609514 58612932 + TkA04G230740.1 Tako4g03024 3024
4 58612981 58614509 - TkA04G230750.1 Tako4g03025 3025
4 58637822 58640257 + TkA04G230820.1 Tako4g03028 3028
4 58642224 58648967 + TkA04G230840.1 Tako4g03031 3031
4 58648886 58650013 - TkA04G230850.1 Tako4g03032 3032
4 58650262 58655621 - TkA04G230860.1 Tako4g03033 3033
4 34393758 34400733 - TbA04G052760.1 Tamo4g02117 2117
4 34419973 34423698 + TbA04G052740.1 Tamo4g02119 2119
4 34456809 34458492 - TbA04G052720.1 Tamo4g02121 2121
4 34458506 34463236 - TbA04G052710.1 Tamo4g02122 2122
       
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