Hierarchical alignments with the <em>Arctium lappa</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Arctium lappa genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.

Query Sequence

Or, Gene ID

Species

Armi_1	Sain_1	Ceso_1	Cati_1	Ccar_1	Cien_1	Cich_1	Lssa_1	Laca_1	Tako_1	Tamo_1	Pslu_1	Lomi_1	Lomi_2	Enbr_1	Ecan_1	Soca_1	Glco_1	Artr_1	Aary_1	Aary_2	Aann_1	Chma_1	Chmo_1	Chmo_2	Chmo_3	Chla_1	Chna_1	Cind_1	Pdy_1	Cobi_1	Hean_1	Bial_1	Bial_2	Dapi_1	Dapi_2	Hetu_1	Hetu_2	Hetu_3	Amtr_1	Smso_1	Smso_2	Taer_1	Fro_1	Fso_1	Ftr_1	Fra_1	Fli_1	Stre_1	Mimi_1	Cobi_2	Hean_2	Bial_3	Bial_4	Dapi_3	Dapi_4	Hetu_4	Hetu_5	Hetu_6	Amtr_2	Smso_3	Smso_4	Taer_2	Fro_2	Fso_2	Ftr_2	Fra_2	Fli_2	Stre_2	Mimi_2
Armi1g00234	Sain12g00223	.	Cati3g00268	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00235	Sain12g00224	Ceso2g03315	Cati3g00269	Ccar2g02146	.	.	.	.	.	.	Pslu1g06556	.	Lomi2g04108	Enbr6g02215	Ecan3g00036	Soca5g05103	.	.	.	.	.	Chma7g07309	Chmo13g01357	.	Chmo15g01177	Chla6g05308	Chna2g01176	Cind3g00510	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00236	Sain12g00226	Ceso2g03316	Cati3g00270	Ccar2g02145	Cien5g03707	Cich4g04970	Lssa7g03972	Laca7g03210	Tako4g03320	.	Pslu1g06557	Lomi1g00520	Lomi2g04107	.	Ecan3g00035	Soca5g05102	Glco3g01858	.	.	.	.	.	.	.	.	.	Chna2g02145	.	Pdy4g01032	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00237	Sain12g00228	Ceso2g03317	Cati3g00271	Ccar2g02144	Cien5g03710	.	Lssa7g03974	Laca7g03211	Tako4g03322	.	Pslu1g06558	Lomi1g00521	Lomi2g04106	Enbr6g02218	Ecan3g00033	Soca5g05100	Glco3g01861	.	.	.	.	Chma7g07307	Chmo13g01359	.	Chmo15g01179	.	Chna2g01178	Cind3g00512	Pdy4g01034	.	Hean6g02862	Bial9g01630	Bial21g01617	Dapi16g01724	.	Hetu17g02287	Hetu16g02390	Hetu18g02570	.	.	Smso26g01709	.	.	.	.	.	.	Stre9g01502	Mimi9g01271	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00238	Sain12g00229	Ceso2g03320	Cati3g00274	Ccar2g02143	Cien5g03711	Cich4g04971	Lssa7g03975	Laca7g03212	Tako4g03323	.	Pslu1g06559	Lomi1g00522	Lomi2g04105	Enbr6g02219	Ecan3g00032	Soca5g05099	Glco3g01862	.	.	.	.	.	Chmo13g01360	.	Chmo15g01180	.	Chna2g01179	Cind3g00513	Pdy4g01035	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00239	Sain12g00230	.	.	Ccar2g02141	.	.	.	.	.	.	.	.	.	Enbr6g02222	Ecan3g00031	Soca5g05098	.	.	.	.	.	.	Chmo13g01361	.	Chmo15g01181	.	Chna2g01180	Cind3g00514	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00240	Sain12g00231	Ceso2g03322	Cati3g00276	Ccar2g02140	Cien5g03712	Cich4g04972	Lssa7g03978	Laca7g03214	Tako4g03324	.	Pslu1g06560	Lomi1g00523	Lomi2g04104	Enbr6g02223	Ecan3g00030	Soca5g05096	Glco3g01866	.	.	.	.	Chma7g07298	Chmo13g01364	Chmo14g01217	Chmo15g01191	.	Chna2g01182	Cind3g00527	Pdy4g01053	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cobi4g02572	Hean11g01281	Bial4g02809	Bial16g02349	Dapi7g00693	Dapi23g00706	.	Hetu31g01187	Hetu33g01339	Amtr02g06308	Smso7g00659	Smso29g00798	.	Fro12g02062	.	.	Fra11g02223	Fli1g00667	Stre6g00865	Mimi17g00872
Armi1g00241	.	.	Cati3g00277	Ccar2g02139	.	.	.	.	.	.	Pslu1g06562	.	.	.	Ecan3g00029	Soca5g05095	.	.	.	.	.	Chma7g07296	Chmo13g01366	Chmo14g01219	Chmo15g01194	.	Chna2g01184	Cind3g00529	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00242	Sain12g00232	Ceso2g03324	Cati3g00278	Ccar2g02138	Cien5g03714	Cich4g04973	Lssa7g03980	Laca7g03217	.	.	Pslu1g06563	Lomi1g00525	Lomi2g04103	Enbr6g02224	Ecan3g00028	.	Glco3g01870	.	.	.	.	Chma7g07294	Chmo13g01367	Chmo14g01220	Chmo15g01195	.	Chna2g01185	Cind3g00530	Pdy4g01056	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cobi4g02568	Hean11g01279	Bial4g02806	.	Dapi7g00694	Dapi23g00708	Hetu32g01236	Hetu31g01192	Hetu33g01341	Amtr02g06305	Smso7g00661	Smso29g00799	Taer1g06051	Fro12g02060	Fso2g00559	Ftr4g03364	Fra11g02221	Fli1g00670	Stre6g00867	Mimi17g00865
.	.	.	.	Ccar2g02137	.	.	.	.	.	.	.	.	Lomi2g04102	Enbr6g02226	Ecan3g00027	Soca5g05090	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	113588350	113593191	+	AtrifAMIRv0_Chr02g0159011	Amtr02g06305	6305
2	113623466	113628332	+	AtrifAMIRv0_Chr02g0159041	Amtr02g06308	6308
1	4186834	4189507	-	AmiAMIRv0_Chr01g0002341	Armi1g00234	234
1	4190903	4196014	+	AmiAMIRv0_Chr01g0002351	Armi1g00235	235
1	4199205	4205563	-	AmiAMIRv0_Chr01g0002361	Armi1g00236	236
1	4272410	4282220	+	AmiAMIRv0_Chr01g0002371	Armi1g00237	237
1	4283894	4289571	-	AmiAMIRv0_Chr01g0002381	Armi1g00238	238
1	4291210	4300254	-	AmiAMIRv0_Chr01g0002391	Armi1g00239	239
1	4310528	4317496	-	AmiAMIRv0_Chr01g0002401	Armi1g00240	240
1	4401295	4401621	+	AmiAMIRv0_Chr01g0002411	Armi1g00241	241
1	4402567	4410689	-	AmiAMIRv0_Chr01g0002421	Armi1g00242	242
4	64252090	64263173	+	g100061.t1	Bial4g02806	2806
4	64295137	64300410	+	g100064.t1	Bial4g02809	2809
9	31699559	31705655	+	g132254.t1	Bial9g01630	1630
16	60829746	60835360	+	g155251.t1	Bial16g02349	2349
21	31800182	31808751	+	g82102.t1	Bial21g01617	1617
3	2187696	2192836	-	CtAH03T0017800.1	Cati3g00268	268
3	2199320	2205660	+	CtAH03T0017900.1	Cati3g00269	269
3	2209360	2212348	-	CtAH03T0018000.1	Cati3g00270	270
3	2212351	2219658	+	CtAH03T0018100.1	Cati3g00271	271
3	2240997	2246996	-	CtAH03T0018400.1	Cati3g00274	274
3	2251447	2258340	-	CtAH03T0018500.1	Cati3g00276	276
3	2260915	2277288	+	CtAH03T0018600.1	Cati3g00277	277
3	2278212	2298313	-	CtAH03T0018700.1	Cati3g00278	278
2	68568947	68574160	-	gnl\|WGS:LEKV\|Ccrd_011186.mRNA.1_mrna	Ccar2g02137	2137
2	68584535	68591298	+	gnl\|WGS:LEKV\|Ccrd_011187.mRNA.1_mrna	Ccar2g02138	2138
2	68592339	68592656	-	gnl\|WGS:LEKV\|Ccrd_011188.mRNA.1_mrna	Ccar2g02139	2139
2	68599370	68605632	+	gnl\|WGS:LEKV\|Ccrd_011189.mRNA.1_mrna	Ccar2g02140	2140
2	68609235	68617518	+	gnl\|WGS:LEKV\|Ccrd_011190.mRNA.1_mrna	Ccar2g02141	2141
2	68618895	68623517	+	gnl\|WGS:LEKV\|Ccrd_011192.mRNA.1_mrna	Ccar2g02143	2143
2	68624473	68633787	-	gnl\|WGS:LEKV\|Ccrd_011193.mRNA.1_mrna	Ccar2g02144	2144
2	68650895	68652657	+	gnl\|WGS:LEKV\|Ccrd_011194.mRNA.1_mrna	Ccar2g02145	2145
2	68654232	68659305	-	gnl\|WGS:LEKV\|Ccrd_011195.mRNA.1_mrna	Ccar2g02146	2146
2	82935532	82940948	+	>KAJ9562668.1	Ceso2g03315	3315
2	82943216	82946829	-	>KAJ9562671.1	Ceso2g03316	3316
2	82963782	82969438	+	>KAJ9562667.1	Ceso2g03317	3317
2	82990629	82996162	-	>KAJ9562722.1	Ceso2g03320	3320
2	83000314	83001830	-	>KAJ9562723.1	Ceso2g03322	3322
2	83020463	83027227	-	>KAJ9562721.1	Ceso2g03324	3324
6	209001675	209007904	-	ClaG1_Chr06g0425551	Chla6g05308	5308
7	250370607	250372549	+	CmaNakai_Chr07g0695961	Chma7g07294	7294
7	250374650	250375218	-	CmaNakai_Chr07g0695981	Chma7g07296	7296
7	250404210	250410475	+	CmaNakai_Chr07g0696001	Chma7g07298	7298
7	251136873	251141205	+	CmaNakai_Chr07g0696091	Chma7g07307	7307
7	251183724	251189251	-	CmaNakai_Chr07g0696111	Chma7g07309	7309
13	70684197	70689843	+	evm.model.scaffold_10346.163	Chmo13g01357	1357
13	70840372	70844908	+	evm.model.scaffold_10346.160	Chmo13g01359	1359
13	70845415	70848697	-	evm.model.scaffold_10346.159.1	Chmo13g01360	1360
13	70911806	70920709	-	evm.model.scaffold_10346.156	Chmo13g01361	1361
13	71166223	71172313	-	evm.model.scaffold_10346.142	Chmo13g01364	1364
13	71213876	71214337	+	evm.model.scaffold_10346.140	Chmo13g01366	1366
13	71214465	71217797	-	evm.model.scaffold_10346.139	Chmo13g01367	1367
14	64148850	64155063	-	evm.model.scaffold_3206.68	Chmo14g01217	1217
14	64188944	64189407	+	evm.model.scaffold_3206.66	Chmo14g01219	1219
14	64189780	64193187	-	evm.model.scaffold_3206.65	Chmo14g01220	1220
15	67631852	67636494	+	evm.model.scaffold_4331.85	Chmo15g01177	1177
15	67811314	67815967	+	evm.model.scaffold_4331.89	Chmo15g01179	1179
15	67816790	67819892	-	evm.model.scaffold_4331.90	Chmo15g01180	1180
15	67844372	67854115	-	evm.model.scaffold_4331.91	Chmo15g01181	1181
15	69427592	69434945	-	evm.model.scaffold_969.330	Chmo15g01191	1191
15	69563144	69563608	+	evm.model.scaffold_969.325	Chmo15g01194	1194
15	69563988	69567094	-	evm.model.scaffold_969.324	Chmo15g01195	1195
2	95673676	95679267	+	Cn0678690	Chna2g01176	1176
2	95965447	95969889	+	Cn0678670	Chna2g01178	1178
2	95970786	95972514	-	Cn0678660	Chna2g01179	1179
2	96033895	96046848	-	Cn0678640	Chna2g01180	1180
2	96568992	96575639	-	Cn0678580	Chna2g01182	1182
2	96661166	96661483	+	Cn0678560	Chna2g01184	1184
2	96661984	96663946	-	Cn0678550	Chna2g01185	1185
2	225622597	225624374	+	Cn0862620	Chna2g02145	2145
4	141099549	141101385	-	KAI3754105.1	Cich4g04970	4970
4	141196561	141198479	-	KAI3754106.1	Cich4g04971	4971
4	141218273	141221354	-	KAI3754107.1	Cich4g04972	4972
4	141232556	141236965	-	KAI3754108.1	Cich4g04973	4973
5	83465002	83466839	-	KAI3510227.1	Cien5g03707	3707
5	83503552	83505878	+	KAI3510230.1	Cien5g03710	3710
5	83506132	83508024	-	KAI3510231.1	Cien5g03711	3711
5	83513211	83516251	-	KAI3510232.1	Cien5g03712	3712
5	83528653	83533030	-	KAI3510234.1	Cien5g03714	3714
3	297465019	297469654	-	D.indicum_Contig13_G00121.t1	Cind3g00510	510
3	297163334	297167652	-	D.indicum_Contig13_G00123.t1	Cind3g00512	512
3	297159744	297162421	+	D.indicum_Contig13_G00124.t1	Cind3g00513	513
3	297092582	297100416	+	D.indicum_Contig13_G00125.t1	Cind3g00514	514
3	295135929	295141788	+	D.indicum_Contig13_G00138.t1	Cind3g00527	527
3	295095731	295096048	-	D.indicum_Contig13_G00140.t1	Cind3g00529	529
3	295091875	295095232	+	D.indicum_Contig13_G00141.t1	Cind3g00530	530
4	68629949	68637937	+	h2tg000009l_1.g42711.t1	Cobi4g02568	2568
4	68703564	68709367	+	h2tg000009l_1.g42707.t1	Cobi4g02572	2572
7	15778666	15786280	-	h1tg000030l.g77283.t1	Dapi7g00693	693
7	15801789	15806148	-	h1tg000030l.g77284.t1	Dapi7g00694	694
16	55020463	55023521	+	h1tg000026l.g56677.t1	Dapi16g01724	1724
23	16988508	16993331	-	h2tg000020l.g164993.t1	Dapi23g00706	706
23	17025962	17029705	-	h2tg000020l.g164991.t1	Dapi23g00708	708
3	168642	172246	-	XM_043763251.1	Ecan3g00027	27
3	180065	184133	+	XM_043762865.1	Ecan3g00028	28
3	184471	184800	-	XM_043762867.1	Ecan3g00029	29
3	188201	195625	+	XM_043763336.1	Ecan3g00030	30
3	198757	205234	+	XM_043762809.1	Ecan3g00031	31
3	206636	209460	+	XM_043766693.1	Ecan3g00032	32
3	209555	213012	-	XM_043766692.1	Ecan3g00033	33
3	242697	245690	+	XM_043765777.1	Ecan3g00035	35
3	252970	261249	-	XM_043766123.1	Ecan3g00036	36
6	78697796	78701197	+	evm.model.ctg3526.7	Enbr6g02215	2215
6	78817739	78820910	+	evm.model.ctg3335.2	Enbr6g02218	2218
6	78821483	78824043	-	evm.model.ctg3335.1	Enbr6g02219	2219
6	79040063	79045829	-	evm.model.ctg810.4	Enbr6g02222	2222
6	79081392	79087786	-	evm.model.ctg3613.2	Enbr6g02223	2223
6	79096956	79108650	-	evm.model.ctg3613.4	Enbr6g02224	2224
6	79303373	79306526	+	evm.model.ctg2161.1	Enbr6g02226	2226
1	14039527	14042351	-	FliAMIRv0_Chr01g0006621	Fli1g00667	667
1	14062382	14066190	-	FliAMIRv0_Chr01g0006651	Fli1g00670	670
11	75396905	75399750	+	FraAMIRv0_Chr11g0222441	Fra11g02221	2221
11	75427663	75432053	+	FraAMIRv0_Chr11g0222461	Fra11g02223	2223
12	27906013	27909345	+	FroAMIRv0_Chr12g0216081	Fro12g02060	2060
12	27918339	27922500	+	FroAMIRv0_Chr12g0216101	Fro12g02062	2062
2	7458015	7462260	-	FsoAMIRv0_Chr02g0033781	Fso2g00559	559
4	115445475	115448471	+	FtrAMIRv0_Chr04g0127981	Ftr4g03364	3364
3	123751578	123753533	-	GcoAMIRv0_Chr03g0174871	Glco3g01858	1858
3	124486427	124491273	+	GcoAMIRv0_Chr03g0174901	Glco3g01861	1861
3	124492499	124495594	-	GcoAMIRv0_Chr03g0174911	Glco3g01862	1862
3	124842362	124847651	-	GcoAMIRv0_Chr03g0174951	Glco3g01866	1866
3	124949332	124953159	-	GcoAMIRv0_Chr03g0174991	Glco3g01870	1870
6	102225561	102228652	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr06g0271021	Hean6g02862	2862
11	36143168	36149235	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr11g0480771	Hean11g01279	1279
11	36165984	36171469	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr11g0480791	Hean11g01281	1281
16	123478406	123484777	+	>Htub.h1tg000461l.g449.t1	Hetu16g02390	2390
17	116370664	116373036	+	>Htub.h2tg000417l.g114.t1	Hetu17g02287	2287
18	122375654	122378026	+	>Htub.h1tg000740l.g27.t1	Hetu18g02570	2570
31	56286317	56291451	-	>Htub.h1tg000206l.g159.t1	Hetu31g01187	1187
31	56410040	56414827	-	>Htub.h1tg000206l.g164.t1	Hetu31g01192	1192
32	59817721	59822426	+	>Htub.h1tg002263l.g85.t1	Hetu32g01236	1236
33	61444250	61449081	-	>Htub.h2tg000109l.g215.t1	Hetu33g01339	1339
33	61503873	61509259	-	>Htub.h2tg000109l.g213.t1	Hetu33g01341	1341
7	149852333	149854436	-	CAI9295415.1	Laca7g03210	3210
7	149983394	149986752	+	CAI9295416.1	Laca7g03211	3211
7	149986780	149988920	-	CAI9295417.1	Laca7g03212	3212
7	149996046	149998470	-	CAI9295419.1	Laca7g03214	3214
7	150052229	150056291	-	CAI9295423.1	Laca7g03217	3217
1	4975271	4977245	-	LmiAMIRv0_Chr01g0005201	Lomi1g00520	520
1	4985458	4988577	+	LmiAMIRv0_Chr01g0005211	Lomi1g00521	521
1	4988897	4990919	-	LmiAMIRv0_Chr01g0005221	Lomi1g00522	522
1	4992507	4996782	-	LmiAMIRv0_Chr01g0005231	Lomi1g00523	523
1	5005120	5008022	-	LmiAMIRv0_Chr01g0005251	Lomi1g00525	525
2	46650246	46653772	-	LmiAMIRv0_Chr02g0086351	Lomi2g04102	4102
2	46659126	46662041	+	LmiAMIRv0_Chr02g0086361	Lomi2g04103	4103
2	46672158	46676587	+	LmiAMIRv0_Chr02g0086371	Lomi2g04104	4104
2	46678892	46680955	+	LmiAMIRv0_Chr02g0086381	Lomi2g04105	4105
2	46681295	46684359	-	LmiAMIRv0_Chr02g0086391	Lomi2g04106	4106
2	46697469	46699701	+	LmiAMIRv0_Chr02g0086401	Lomi2g04107	4107
2	46700524	46703791	-	LmiAMIRv0_Chr02g0086411	Lomi2g04108	4108
7	207538896	207541184	-	>KAJ0198491.1	Lssa7g03972	3972
7	207684684	207688310	+	>KAJ0197019.1	Lssa7g03974	3974
7	207688282	207690281	-	>KAJ0196281.1	Lssa7g03975	3975
7	207722055	207725988	-	>KAJ0197709.1	Lssa7g03978	3978
7	207822990	207826905	-	>KAJ0196694.1	Lssa7g03980	3980
9	30392819	30405688	+	KAD5318006.1	Mimi9g01271	1271
17	48985158	49006386	+	KAD3067187.1	Mimi17g00865	865
17	49074688	49080094	+	KAD3067194.1	Mimi17g00872	872
4	19516722	19518985	-	PdyAMIRv0_Chr04g0158391	Pdy4g01032	1032
4	19600865	19607602	+	PdyAMIRv0_Chr04g0158411	Pdy4g01034	1034
4	19608121	19609964	-	PdyAMIRv0_Chr04g0158421	Pdy4g01035	1035
4	20142232	20145858	-	PdyAMIRv0_Chr04g0158601	Pdy4g01053	1053
4	20155394	20159066	-	PdyAMIRv0_Chr04g0158631	Pdy4g01056	1056
1	44949595	44952654	+	PluAMIRv0_Chr01g0065321	Pslu1g06556	6556
1	44953375	44955668	-	PluAMIRv0_Chr01g0065331	Pslu1g06557	6557
1	44963776	44966734	+	PluAMIRv0_Chr01g0065341	Pslu1g06558	6558
1	44967060	44969035	-	PluAMIRv0_Chr01g0065351	Pslu1g06559	6559
1	44972307	44976650	-	PluAMIRv0_Chr01g0065361	Pslu1g06560	6560
1	44991168	44991485	+	PluAMIRv0_Chr01g0065381	Pslu1g06562	6562
1	44991994	44994816	-	PluAMIRv0_Chr01g0065391	Pslu1g06563	6563
12	4024017	4027486	-	SinAMIRv0_Chr12g0357881	Sain12g00223	223
12	4028396	4032247	+	SinAMIRv0_Chr12g0357891	Sain12g00224	224
12	4041401	4044045	-	SinAMIRv0_Chr12g0357911	Sain12g00226	226
12	4089068	4093397	+	SinAMIRv0_Chr12g0357931	Sain12g00228	228
12	4094236	4098939	-	SinAMIRv0_Chr12g0357941	Sain12g00229	229
12	4100364	4107618	-	SinAMIRv0_Chr12g0357951	Sain12g00230	230
12	4125308	4130578	-	SinAMIRv0_Chr12g0357961	Sain12g00231	231
12	4176186	4183210	-	SinAMIRv0_Chr12g0357971	Sain12g00232	232
7	11473736	11478355	-	KAI3810239.1	Smso7g00659	659
7	11503441	11513459	-	KAI3810241.1	Smso7g00661	661
26	27521500	27526423	+	KAI3695194.1	Smso26g01709	1709
29	11780490	11789374	-	KAI3675792.1	Smso29g00798	798
29	11811949	11816850	-	KAI3675793.1	Smso29g00799	799
5	68937112	68940877	-	augustus11881.t01	Soca5g05090	5090
5	69018072	69018511	-	transfrag8021.t01	Soca5g05095	5095
5	69075081	69081626	+	augustus11874.t01	Soca5g05096	5096
5	69162418	69168285	+	asmbl_1486.p4	Soca5g05098	5098
5	69175003	69177771	+	asmbl_1482.p1	Soca5g05099	5099
5	69177997	69181297	-	augustus11864.t01	Soca5g05100	5100
5	69229611	69232210	+	transfrag8010.t02	Soca5g05102	5102
5	69239334	69245791	-	transfrag8009.t01	Soca5g05103	5103
6	27766192	27771094	-	Streb.6G008650.1	Stre6g00865	865
6	27814875	27818991	-	Streb.6G008670.1	Stre6g00867	867
9	26517599	26521387	+	Streb.9G015020.1	Stre9g01502	1502
1	54384523	54387619	-	>KAK1440226.1	Taer1g06051	6051
4	68192924	68194729	-	TkA04G269910.1	Tako4g03320	3320
4	68212550	68215347	+	TkA04G269930.2	Tako4g03322	3322
4	68215018	68216969	-	TkA04G269940.1	Tako4g03323	3323
4	68218170	68222018	-	TkA04G269950.1	Tako4g03324	3324

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