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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00646 Sain12g00541 . Cati3g00689 Ccar2g01935 . Cich4g04359 Lssa7g03323 . Tako4g04108 Tamo4g03020 Pslu1g21502 Lomi1g00238 Lomi2g04419 . Ecan3g02072 . Glco3g00922 Artr3g11890 . Aary13g03370 Aann4g01263 . . . . Chla6g06039 Chna2g00497 Cind3g03532 . . Hean4g04344 . . Dapi16g01902 Dapi23g00249 Hetu11g00219 Hetu12g00216 Hetu10g00236 . . . . . . . . . Stre6g00302 . . Hean11g00672 Bial12g02411 . Dapi7g00229 Dapi23g00249 Hetu32g00527 Hetu31g00464 Hetu33g00617 . Smso7g00114 . . . . . . . Stre6g00302 Mimi17g00319
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00647 Sain12g00542 Ceso2g01450 Cati3g00690 Ccar2g01933 . Cich4g04358 Lssa7g03322 . Tako4g04109 Tamo4g03021 Pslu1g21503 Lomi1g00237 Lomi2g04420 Enbr6g01467 Ecan3g02070 Soca5g02809 Glco3g00921 Artr3g11893 . Aary13g03371 Aann4g01264 . Chmo13g00662 Chmo14g00650 Chmo15g00525 Chla6g06041 Chna2g00496 Cind3g03533 Pdy4g00422 . . . . . . . . . . . . . . . . . . . . Cobi4g03179 Hean11g00670 Bial4g03480 Bial16g02882 Dapi7g00228 Dapi23g00248 . Hetu31g00463 . . Smso7g00115 Smso29g00146 Taer1g05584 Fro12g02437 Fso2g00134 Ftr4g03731 Fra11g02570 Fli1g00232 Stre6g00301 Mimi17g00318
Armi1g00648 Sain12g00543 . Cati3g00692 Ccar2g01932 . Cich4g04354 Lssa7g03320 . Tako4g04111 Tamo4g03022 Pslu1g21506 Lomi1g00236 Lomi2g04421 . Ecan3g02069 Soca5g02811 Glco3g00920 Artr3g11896 . Aary13g03372 Aann4g01265 . Chmo13g00661 Chmo14g00649 Chmo15g00524 Chla6g06046 Chna2g00495 Cind3g03534 Pdy4g00419 . . . . . . . . . . . . . . . . . . . . Cobi4g03180 Hean11g00669 Bial4g03482 Bial16g02884 Dapi7g00227 Dapi23g00247 Hetu32g00526 Hetu31g00462 Hetu33g00616 . Smso7g00117 Smso29g00147 . Fro12g02439 . . . Fli1g00225 Stre6g00300 Mimi17g00317
Armi1g00652 Sain12g00545 . Cati3g00694 Ccar2g01931 . Cich4g04352 Lssa7g03319 . Tako4g04117 Tamo4g03025 Pslu1g21509 Lomi1g00235 Lomi2g04422 Enbr6g01462 Ecan3g02068 Soca5g02812 Glco3g00919 Artr3g11905 . Aary13g03373 Aann4g01268 . Chmo13g00660 Chmo14g00648 Chmo15g00523 Chla6g06047 Chna2g00494 Cind3g03535 Pdy4g01627 . . . . . . . . . . . . . . . . . . . . Cobi4g03083 Hean11g00869 Bial4g03370 Bial16g02767 Dapi7g00337 Dapi23g00360 Hetu32g00677 Hetu31g00639 Hetu33g00778 Amtr02g06957 . . . . . . . . Stre6g00436 Mimi17g00429
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00656 Sain12g00550 . . . . . . . . . . . Lomi2g04424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 67034659 67037820 - chr4g0781361 Aann4g01263 1263
4 67041060 67042264 - chr4g0781371 Aann4g01264 1264
4 67043449 67049244 + chr4g0781381 Aann4g01265 1265
4 67104245 67109884 + chr4g0781491 Aann4g01268 1268
13 201951093 201953102 - Aargg13g33700.1 Aary13g03370 3370
13 201958341 201959331 - Aargg13g33710.1 Aary13g03371 3371
13 201986466 201987797 + Aargg13g33720.1 Aary13g03372 3372
13 202058420 202063560 + Aargg13g33730.1 Aary13g03373 3373
2 126914494 126918365 + AtrifAMIRv0_Chr02g0165531 Amtr02g06957 6957
1 15176573 15177235 - AmiAMIRv0_Chr01g0006461 Armi1g00646 646
1 15222927 15223451 - AmiAMIRv0_Chr01g0006471 Armi1g00647 647
1 15225881 15227212 + AmiAMIRv0_Chr01g0006481 Armi1g00648 648
1 15345965 15351372 + AmiAMIRv0_Chr01g0006521 Armi1g00652 652
1 15375597 15376169 + AmiAMIRv0_Chr01g0006561 Armi1g00656 656
3 407283916 407285694 - AtridAMIRv0_Chr03g0426261 Artr3g11890 11890
3 407381001 407381768 - AtridAMIRv0_Chr03g0426291 Artr3g11893 11893
3 407448416 407449717 + AtridAMIRv0_Chr03g0426321 Artr3g11896 11896
3 407683963 407688854 + AtridAMIRv0_Chr03g0426411 Artr3g11905 11905
4 76875845 76877440 + g43209.t1 Bial4g03370 3370
4 79129752 79131205 - g43319.t1 Bial4g03480 3480
4 79149643 79150965 + g43321.t1 Bial4g03482 3482
12 54394158 54394727 - g35610.t1 Bial12g02411 2411
16 70991161 70995818 + g127433.t1 Bial16g02767 2767
16 73271350 73272803 - g127318.t1 Bial16g02882 2882
16 73291241 73292563 + g127316.t1 Bial16g02884 2884
3 7520367 7521887 - CtAH03T0049100.1 Cati3g00689 689
3 7527227 7528120 - CtAH03T0049200.1 Cati3g00690 690
3 7532084 7535577 + CtAH03T0049300.2 Cati3g00692 692
3 7541517 7548203 + CtAH03T0049400.1 Cati3g00694 694
2 65884482 65891088 - gnl|WGS:LEKV|Ccrd_010977.mRNA.1_mrna Ccar2g01931 1931
2 65898744 65900072 - gnl|WGS:LEKV|Ccrd_010978.mRNA.1_mrna Ccar2g01932 1932
2 65907002 65907588 + gnl|WGS:LEKV|Ccrd_010979.mRNA.1_mrna Ccar2g01933 1933
2 65912352 65913032 + gnl|WGS:LEKV|Ccrd_010981.mRNA.1_mrna Ccar2g01935 1935
2 30087876 30088460 - >KAJ9560724.1 Ceso2g01450 1450
6 243611049 243613001 - ClaG1_Chr06g0432861 Chla6g06039 6039
6 243667518 243668881 - ClaG1_Chr06g0432881 Chla6g06041 6041
6 243784878 243787170 + ClaG1_Chr06g0432931 Chla6g06046 6046
6 243898974 243904170 + ClaG1_Chr06g0432941 Chla6g06047 6047
13 30775185 30775991 - evm.model.scaffold_530.168 Chmo13g00660 660
13 30884213 30886010 - evm.model.scaffold_530.174 Chmo13g00661 661
13 30940213 30941490 + evm.model.scaffold_530.178 Chmo13g00662 662
14 28719770 28725244 - evm.model.scaffold_464.150 Chmo14g00648 648
14 28822671 28824482 - evm.model.scaffold_464.142 Chmo14g00649 649
14 28895028 28896307 + evm.model.scaffold_464.140 Chmo14g00650 650
15 27036489 27040035 - evm.model.scaffold_504.157 Chmo15g00523 523
15 27410449 27411780 - evm.model.scaffold_504.140 Chmo15g00524 524
15 27447162 27448419 + evm.model.scaffold_504.137 Chmo15g00525 525
2 34314619 34319779 - Cn0777860 Chna2g00494 494
2 34411048 34412379 - Cn0777870 Chna2g00495 495
2 34511805 34512675 + Cn0777880 Chna2g00496 496
2 34632085 34633672 + Cn0777900 Chna2g00497 497
4 127412804 127417462 - KAI3753487.1 Cich4g04352 4352
4 127422094 127423404 - KAI3753489.1 Cich4g04354 4354
4 127453093 127453647 + KAI3753493.1 Cich4g04358 4358
4 127462282 127462926 + KAI3753494.1 Cich4g04359 4359
3 343441065 343442665 - D.indicum_Contig356_G00024.t1 Cind3g03532 3532
3 343590035 343590783 - D.indicum_Contig356_G00025.t1 Cind3g03533 3533
3 343629626 343630957 + D.indicum_Contig356_G00026.t1 Cind3g03534 3534
3 343734372 343739554 + D.indicum_Contig356_G00027.t1 Cind3g03535 3535
4 80057183 80067243 + h2tg000009l_1.g42196.t1 Cobi4g03083 3083
4 81317773 81320234 - h2tg000009l_1.g42100.t1 Cobi4g03179 3179
4 81322441 81323751 + h2tg000009l_1.g42099.t1 Cobi4g03180 3180
7 4657087 4658400 - h1tg000136l.g124437.t1 Dapi7g00227 227
7 4669358 4669886 + h1tg000136l.g124436.t1 Dapi7g00228 228
7 4671656 4672276 + h1tg000136l.g124435.t1 Dapi7g00229 229
7 7144712 7148299 - h1tg000030l.g76927.t1 Dapi7g00337 337
16 71864623 71865063 - h1tg000026l.g56855.t1 Dapi16g01902 1902
23 5198822 5200147 - h2tg000284l.g80798.t1 Dapi23g00247 247
23 5207843 5208647 + h2tg000284l.g80797.t1 Dapi23g00248 248
23 5209701 5210321 + h2tg000284l.g80796.t1 Dapi23g00249 249
23 7830268 7838141 - h2tg000233l.g74324.t1 Dapi23g00360 360
3 31553895 31558812 - XM_043765239.1 Ecan3g02068 2068
3 31564690 31566507 - XM_043763780.1 Ecan3g02069 2069
3 31568318 31569652 + XM_043765676.1 Ecan3g02070 2070
3 31571887 31576192 - XM_043765530.1 Ecan3g02072 2072
6 50434662 50439096 - evm.model.ctg7164.4 Enbr6g01462 1462
6 50643085 50644003 + evm.model.ctg2662.9 Enbr6g01467 1467
1 4618424 4618705 - FliAMIRv0_Chr01g0002201 Fli1g00225 225
1 4718679 4719256 + FliAMIRv0_Chr01g0002271 Fli1g00232 232
11 79330886 79331448 - FraAMIRv0_Chr11g0225921 Fra11g02570 2570
12 32181857 32182422 - FroAMIRv0_Chr12g0219851 Fro12g02437 2437
12 32186478 32186804 + FroAMIRv0_Chr12g0219871 Fro12g02439 2439
2 1931006 1931558 + FsoAMIRv0_Chr02g0029531 Fso2g00134 134
4 121135906 121136470 - FtrAMIRv0_Chr04g0131651 Ftr4g03731 3731
3 52795636 52799982 - GcoAMIRv0_Chr03g0165481 Glco3g00919 919
3 52831131 52832468 - GcoAMIRv0_Chr03g0165491 Glco3g00920 920
3 52894736 52895662 + GcoAMIRv0_Chr03g0165501 Glco3g00921 921
3 52940372 52942182 + GcoAMIRv0_Chr03g0165511 Glco3g00922 922
4 204174547 204175455 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0189651 Hean4g04344 4344
11 13519144 13520942 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0473701 Hean11g00669 669
11 13650604 13651443 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0473711 Hean11g00670 670
11 13653070 13653909 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0473731 Hean11g00672 672
11 20431228 20435585 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0476061 Hean11g00869 869
10 9776935 9777483 + >Htub.h1tg000798l.g454.t1 Hetu10g00236 236
11 7676119 7676667 + >Htub.h1tg000030l.g277.t1 Hetu11g00219 219
12 8086038 8086586 + >Htub.h1tg004588l.g152.t1 Hetu12g00216 216
31 15686375 15687682 - >Htub.h1tg001140l.g346.t1 Hetu31g00462 462
31 15794728 15795267 + >Htub.h1tg001140l.g345.t1 Hetu31g00463 463
31 15800029 15800604 + >Htub.h1tg001140l.g344.t1 Hetu31g00464 464
31 25835407 25839887 - >Htub.h1tg001429l.g221.t1 Hetu31g00639 639
32 20594946 20596253 - >Htub.h1tg001632l.g231.t1 Hetu32g00526 526
32 20652149 20652724 + >Htub.h1tg001632l.g233.t1 Hetu32g00527 527
32 29128571 29133053 - >Htub.h1tg002251l.g214.t1 Hetu32g00677 677
33 20252820 20254127 - >Htub.h1tg000986l.g462.t1 Hetu33g00616 616
33 20308382 20308957 + >Htub.h1tg000986l.g460.t1 Hetu33g00617 617
33 30221708 30225324 - >Htub.h1tg001292l.g371.t1 Hetu33g00778 778
1 2048551 2052979 - LmiAMIRv0_Chr01g0002351 Lomi1g00235 235
1 2056557 2057879 - LmiAMIRv0_Chr01g0002361 Lomi1g00236 236
1 2063903 2064458 + LmiAMIRv0_Chr01g0002371 Lomi1g00237 237
1 2066333 2066965 + LmiAMIRv0_Chr01g0002381 Lomi1g00238 238
2 49452191 49452823 - LmiAMIRv0_Chr02g0089521 Lomi2g04419 4419
2 49454558 49455114 - LmiAMIRv0_Chr02g0089531 Lomi2g04420 4420
2 49457305 49458627 + LmiAMIRv0_Chr02g0089541 Lomi2g04421 4421
2 49466206 49470627 + LmiAMIRv0_Chr02g0089551 Lomi2g04422 4422
2 49479070 49479717 + LmiAMIRv0_Chr02g0089571 Lomi2g04424 4424
7 176809347 176814568 + >KAJ0196354.1 Lssa7g03319 3319
7 176819736 176821058 - >KAJ0197830.1 Lssa7g03320 3320
7 176982364 176983097 + >KAJ0196823.1 Lssa7g03322 3322
7 176988843 176989487 + >KAJ0198141.1 Lssa7g03323 3323
17 9284219 9285499 - KAD3066639.1 Mimi17g00317 317
17 9303573 9304913 + KAD3066640.1 Mimi17g00318 318
17 9311175 9311792 + KAD3066641.1 Mimi17g00319 319
17 14570812 14571471 - KAD3066751.1 Mimi17g00429 429
4 8012030 8013352 - PdyAMIRv0_Chr04g0152271 Pdy4g00419 419
4 8026829 8028382 + PdyAMIRv0_Chr04g0152301 Pdy4g00422 422
4 43043725 43044872 - PdyAMIRv0_Chr04g0164341 Pdy4g01627 1627
1 154379392 154380027 - PluAMIRv0_Chr01g0214071 Pslu1g21502 21502
1 154383701 154384238 - PluAMIRv0_Chr01g0214081 Pslu1g21503 21503
1 154395519 154396841 + PluAMIRv0_Chr01g0214111 Pslu1g21506 21506
1 154422933 154427318 + PluAMIRv0_Chr01g0214141 Pslu1g21509 21509
12 12073220 12073861 - SinAMIRv0_Chr12g0361051 Sain12g00541 541
12 12117937 12118441 - SinAMIRv0_Chr12g0361061 Sain12g00542 542
12 12137246 12138565 + SinAMIRv0_Chr12g0361071 Sain12g00543 543
12 12266212 12272904 + SinAMIRv0_Chr12g0361091 Sain12g00545 545
12 12357499 12358047 + SinAMIRv0_Chr12g0361141 Sain12g00550 550
7 1977096 1977728 - KAI3809694.1 Smso7g00114 114
7 1979366 1980579 - KAI3809695.1 Smso7g00115 115
7 1986345 1987640 + KAI3809697.1 Smso7g00117 117
29 2323336 2326557 - KAI3675140.1 Smso29g00146 146
29 2331057 2332355 + KAI3675141.1 Smso29g00147 147
5 31037533 31038877 - transfrag32010.t01 Soca5g02809 2809
5 31046437 31048234 + asmbl_5732.p1 Soca5g02811 2811
5 31053562 31059007 + asmbl_5673.p1 Soca5g02812 2812
6 8172343 8174318 - Streb.6G003000.1 Stre6g00300 300
6 8182525 8183189 + Streb.6G003010.1 Stre6g00301 301
6 8194179 8195898 + Streb.6G003020.1 Stre6g00302 302
6 11662464 11667365 - Streb.6G004360.1 Stre6g00436 436
1 50891854 50892394 - >KAK1439764.1 Taer1g05584 5584
4 92780864 92782543 - TkA04G369030.1 Tako4g04108 4108
4 92785007 92785847 - TkA04G369040.1 Tako4g04109 4109
4 92786970 92790558 + TkA04G369050.2 Tako4g04111 4111
4 92820614 92833574 - TkA04G369260.1 Tako4g04117 4117
4 57826696 57829036 - TbA04G024710.1 Tamo4g03020 3020
4 57861761 57862632 - TbA04G024680.1 Tamo4g03021 3021
4 57863604 57865863 + TbA04G024670.1 Tamo4g03022 3022
4 57877894 57883098 - TbA04G024630.1 Tamo4g03025 3025
       
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