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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00853 . . . . . . . . . . . . . . . . . . . . . Chma7g08720 . . Chmo15g00309 Chla6g06358 Chna2g00279 Cind3g05709 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. Sain12g00682 . Cati3g00888 Ccar2g01863 . Cich4g04190 Lssa7g03138 Laca7g02552 Tako4g04440 Tamo4g03189 Pslu1g21722 Lomi1g00146 Lomi2g04513 Enbr6g01277 Ecan3g01929 Soca5g02956 Glco3g00226 Artr3g12366 Aary5g02972 Aary13g03513 Aann4g01457 . . . . . . . Pdy4g00254 . . . . . . . . . . . . . . . . . . . . Cobi4g03327 Hean16g00820 Bial4g03639 Bial16g02985 Dapi7g00103 Dapi23g00126 Hetu48g00890 Hetu46g01018 Hetu47g00987 Amtr01g04306 Smso7g00221 Smso29g00259 . . . . . . Stre6g00159 Mimi17g00152
. . Ceso2g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00855 Sain12g00683 Ceso2g01607 Cati3g00889 Ccar2g01862 . Cich4g04189 Lssa7g03137 . . Tamo4g03190 Pslu1g21723 Lomi1g00145 Lomi2g04514 Enbr6g01275 Ecan3g01926 Soca5g02957 Glco3g00228 Artr3g12368 Aary5g02973 Aary13g03515 Aann4g01462 Chma7g08748 Chmo13g00456 Chmo14g00422 Chmo15g00299 Chla6g06485 Chna2g00272 . Pdy4g00253 . . . . . . . . . . . . . . . . . . . . Cobi4g03326 Hean16g00825 Bial4g03638 Bial16g02984 Dapi7g00104 Dapi23g00128 Hetu48g00885 Hetu46g01011 Hetu47g00986 Amtr01g04304 Smso7g00219 Smso29g00258 Taer1g05701 Fro12g02548 . Ftr4g03829 Fra11g02768 Fli1g00122 Stre6g00160 Mimi17g00153
Armi1g00856 Sain12g00684 Ceso2g01608 Cati3g00891 Ccar2g01861 Cien5g03083 Cich4g04187 Lssa7g03136 . Tako4g04443 Tamo4g03191 Pslu1g21724 Lomi1g00144 Lomi2g04515 Enbr6g01274 Ecan3g01924 Soca5g02958 Glco3g00231 Artr3g12370 Aary5g02974 Aary13g03516 Aann4g01463 Chma7g08749 Chmo13g00455 Chmo14g00421 Chmo15g00298 Chla6g06486 Chna2g00271 . Pdy4g00252 . . . . . . . . . . . . . . . . . . . . Cobi4g03325 Hean16g00826 Bial4g03637 Bial16g02983 Dapi7g00105 Dapi23g00129 Hetu48g00884 Hetu46g01009 Hetu47g00984 Amtr01g04303 Smso7g00218 Smso29g00257 . . . . . Fli1g00124 Stre6g00161 Mimi17g00154
Armi1g00864 Sain12g00685 Ceso2g01609 Cati3g00893 Ccar2g01860 Cien5g03081 Cich4g04185 Lssa7g03135 . . . Pslu1g21728 Lomi1g00143 Lomi2g04516 Enbr6g01273 Ecan3g01922 Soca5g02959 Glco3g00235 . . . . . Chmo13g00453 Chmo14g00417 Chmo15g00295 Chla6g06487 Chna2g00269 . . . Hean4g04485 . . Dapi16g02026 . Hetu11g00106 Hetu12g00101 Hetu10g00124 Amtr06g04282 . Smso26g02017 . . . . . . . . Cobi4g03321 Hean16g00827 . Bial24g02354 Dapi7g00106 Dapi23g00130 Hetu48g00883 Hetu46g01007 Hetu47g00983 Amtr01g04301 Smso7g00217 Smso29g00256 Taer1g05697 . . . . Fli1g00126 Stre6g00162 .
Armi1g00865 Sain12g00687 Ceso2g01611 Cati3g00899 Ccar2g01859 Cien5g03080 Cich4g04183 Lssa7g03134 . Tako4g04446 Tamo4g03192 Pslu1g21729 . Lomi2g04517 Enbr6g01272 Ecan3g01921 Soca5g02960 Glco3g00250 . . . . Chma7g08758 Chmo13g00450 Chmo14g00414 Chmo15g00293 Chla6g06490 Chna2g00267 Cind3g00128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00869 Sain12g00688 Ceso2g01612 Cati3g00902 Ccar2g01858 . . Lssa7g03133 . Tako4g04447 Tamo4g03196 Pslu1g21734 . Lomi2g04518 . Ecan3g01920 Soca5g02962 . . . . . . Chmo13g00449 Chmo14g00413 Chmo15g00292 Chla6g06492 Chna2g00266 Cind3g00129 . . . . . . . . . . . . . . . . . . . . . . Hean16g00828 Bial12g02507 Bial24g02356 . . Hetu48g00882 Hetu46g01006 Hetu47g00982 . Smso7g00215 . . . . . . Fli1g00131 Stre6g00164 Mimi17g00155
. Sain12g00689 . . . . . . . . . . . . . . . . . . . . . Chmo13g00448 Chmo14g00412 Chmo15g00291 . Chna2g00265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 72189658 72200730 - chr4g0786351 Aann4g01457 1457
4 72618400 72626713 + chr4g0786581 Aann4g01462 1462
4 72645252 72651649 - chr4g0786601 Aann4g01463 1463
5 181135540 181144002 - Aargg5g29720.1 Aary5g02972 2972
5 181180729 181188848 + Aargg5g29730.1 Aary5g02973 2973
5 181193362 181199389 - Aargg5g29740.1 Aary5g02974 2974
13 211008552 211016220 - Aargg13g35130.1 Aary13g03513 3513
13 211359150 211367116 + Aargg13g35150.1 Aary13g03515 3515
13 211391153 211394390 - Aargg13g35160.1 Aary13g03516 3516
1 115992101 115992577 + AtrifAMIRv0_Chr01g0043011 Amtr01g04301 4301
1 116148480 116151462 + AtrifAMIRv0_Chr01g0043031 Amtr01g04303 4303
1 116156310 116166441 - AtrifAMIRv0_Chr01g0043041 Amtr01g04304 4304
1 116240264 116250019 + AtrifAMIRv0_Chr01g0043061 Amtr01g04306 4306
6 94603820 94604410 - AtrifAMIRv0_Chr06g0431071 Amtr06g04282 4282
1 22656544 22656810 - AmiAMIRv0_Chr01g0008531 Armi1g00853 853
1 22721061 22733094 + AmiAMIRv0_Chr01g0008551 Armi1g00855 855
1 22735951 22740272 - AmiAMIRv0_Chr01g0008561 Armi1g00856 856
1 22852280 22852783 - AmiAMIRv0_Chr01g0008641 Armi1g00864 864
1 22860424 22862717 - AmiAMIRv0_Chr01g0008651 Armi1g00865 865
1 22909828 22915384 - AmiAMIRv0_Chr01g0008691 Armi1g00869 869
3 424896941 424904856 - AtridAMIRv0_Chr03g0431021 Artr3g12366 12366
3 424956725 424964417 + AtridAMIRv0_Chr03g0431041 Artr3g12368 12368
3 424977719 424980424 - AtridAMIRv0_Chr03g0431061 Artr3g12370 12370
4 81961565 81964370 + g62285.t1 Bial4g03637 3637
4 81967625 81976299 - g62284.t1 Bial4g03638 3638
4 81978185 81987668 + g62283.t1 Bial4g03639 3639
12 55355563 55357605 - g35706.t1 Bial12g02507 2507
16 74944542 74948288 + g59544.t1 Bial16g02983 2983
16 74950586 74960237 - g59543.t1 Bial16g02984 2984
16 74962297 74970495 + g59542.t1 Bial16g02985 2985
24 54261432 54261905 - g68020.t1 Bial24g02354 2354
24 54280245 54282287 - g68022.t1 Bial24g02356 2356
3 10746127 10759786 - CtAH03T0063300.1 Cati3g00888 888
3 10779331 10790727 + CtAH03T0063400.1 Cati3g00889 889
3 10792471 10799054 - CtAH03T0063500.1 Cati3g00891 891
3 10862686 10863886 - CtAH03T0063700.1 Cati3g00893 893
3 10897962 10909555 - CtAH03T0063900.1 Cati3g00899 899
3 10912327 10917798 - CtAH03T0064000.1 Cati3g00902 902
2 64960485 64966407 + gnl|WGS:LEKV|Ccrd_010904.mRNA.1_mrna Ccar2g01858 1858
2 64973421 64986096 + gnl|WGS:LEKV|Ccrd_010905.mRNA.1_mrna Ccar2g01859 1859
2 64991715 64992583 + gnl|WGS:LEKV|Ccrd_010906.mRNA.1_mrna Ccar2g01860 1860
2 65004066 65010182 + gnl|WGS:LEKV|Ccrd_010907.mRNA.1_mrna Ccar2g01861 1861
2 65012647 65023553 - gnl|WGS:LEKV|Ccrd_010908.mRNA.1_mrna Ccar2g01862 1862
2 65030296 65040218 + gnl|WGS:LEKV|Ccrd_010909.mRNA.1_mrna Ccar2g01863 1863
2 34058069 34074608 - >KAJ9561130.1 Ceso2g01604 1604
2 34097488 34107358 + >KAJ9561007.1 Ceso2g01607 1607
2 34109534 34114206 - >KAJ9561010.1 Ceso2g01608 1608
2 34124994 34125510 - >KAJ9561013.1 Ceso2g01609 1609
2 34137040 34142416 - >KAJ9561011.1 Ceso2g01611 1611
2 34149239 34153134 - >KAJ9561012.1 Ceso2g01612 1612
6 260224710 260233904 + ClaG1_Chr06g0436051 Chla6g06358 6358
6 266060174 266067199 + ClaG1_Chr06g0437321 Chla6g06485 6485
6 266075174 266081618 - ClaG1_Chr06g0437331 Chla6g06486 6486
6 266116204 266117047 - ClaG1_Chr06g0437341 Chla6g06487 6487
6 266206397 266209660 - ClaG1_Chr06g0437371 Chla6g06490 6490
6 266239693 266243892 - ClaG1_Chr06g0437391 Chla6g06492 6492
7 295518059 295526950 - CmaNakai_Chr07g0710221 Chma7g08720 8720
7 296414108 296419537 + CmaNakai_Chr07g0710501 Chma7g08748 8748
7 296423720 296426840 - CmaNakai_Chr07g0710511 Chma7g08749 8749
7 296682615 296685482 - CmaNakai_Chr07g0710601 Chma7g08758 8758
13 20014374 20016453 - evm.model.scaffold_1427.61 Chmo13g00448 448
13 20030815 20035817 + evm.model.scaffold_1427.62 Chmo13g00449 449
13 20081357 20084030 + evm.model.scaffold_1427.63 Chmo13g00450 450
13 20152959 20154030 + evm.model.scaffold_1427.66 Chmo13g00453 453
13 20340461 20344823 + evm.model.scaffold_1427.72 Chmo13g00455 455
13 20347270 20355009 - evm.model.scaffold_1427.73 Chmo13g00456 456
14 17018346 17020419 - evm.model.scaffold_601.89 Chmo14g00412 412
14 17029457 17032753 + evm.model.scaffold_601.88 Chmo14g00413 413
14 17076148 17078797 + evm.model.scaffold_601.87 Chmo14g00414 414
14 17192658 17193125 + evm.model.scaffold_601.83 Chmo14g00417 417
14 17317656 17321728 + evm.model.scaffold_601.76 Chmo14g00421 421
14 17327556 17336003 - evm.model.scaffold_601.75 Chmo14g00422 422
15 15355443 15357513 - evm.model.scaffold_1588.173 Chmo15g00291 291
15 15360171 15364148 + evm.model.scaffold_1588.174 Chmo15g00292 292
15 15379562 15382135 + evm.model.scaffold_1588.175 Chmo15g00293 293
15 15484378 15484844 + evm.model.scaffold_1588.179 Chmo15g00295 295
15 15591731 15597875 + evm.model.scaffold_1588.186 Chmo15g00298 298
15 15599353 15607099 - evm.model.scaffold_1588.187 Chmo15g00299 299
15 16239402 16249644 + evm.model.scaffold_4533.12 Chmo15g00309 309
2 15636350 15642260 - Cn1266460 Chna2g00265 265
2 15650575 15653950 + Cn1266450 Chna2g00266 266
2 15716636 15719454 + Cn1266430 Chna2g00267 267
2 15825534 15826489 + Cn1266370 Chna2g00269 269
2 15932637 15942172 + Cn1266320 Chna2g00271 271
2 15944299 15951850 - Cn1266310 Chna2g00272 272
2 16160649 16169569 + Cn1266180 Chna2g00279 279
4 122421519 122424484 + KAI3753318.1 Cich4g04183 4183
4 122468624 122469091 + KAI3753320.1 Cich4g04185 4185
4 122508458 122510726 + KAI3753322.1 Cich4g04187 4187
4 122531736 122536246 - KAI3753324.1 Cich4g04189 4189
4 122595247 122602656 + KAI3753325.1 Cich4g04190 4190
5 73669402 73672234 + KAI3509600.1 Cien5g03080 3080
5 73689885 73690351 + KAI3509601.1 Cien5g03081 3081
5 73695632 73697059 + KAI3509603.1 Cien5g03083 3083
3 357435055 357437067 - D.indicum_Contig1097_G00003.t1 Cind3g00128 128
3 357542682 357546081 - D.indicum_Contig1097_G00004.t1 Cind3g00129 129
3 356397788 356406920 - D.indicum_Contig849_G00008.t1 Cind3g05709 5709
4 83459973 83460474 + h2tg000064l_1.g27536.t1 Cobi4g03321 3321
4 83480764 83484304 + h2tg000064l_1.g27540.t1 Cobi4g03325 3325
4 83485948 83493588 - h2tg000064l_1.g27541.t1 Cobi4g03326 3326
4 83500151 83508291 + h2tg000064l_1.g27542.t1 Cobi4g03327 3327
7 1899434 1908392 - h1tg000136l.g124561.t1 Dapi7g00103 103
7 1997079 2011621 + h1tg000136l.g124560.t1 Dapi7g00104 104
7 2017033 2019598 - h1tg000136l.g124559.t1 Dapi7g00105 105
7 2048595 2051067 - h1tg000136l.g124558.t1 Dapi7g00106 106
16 79679194 79679683 - h1tg000026l.g56979.t1 Dapi16g02026 2026
23 2575557 2584092 - h2tg000064l.g12464.t1 Dapi23g00126 126
23 2637325 2646803 + h2tg000064l.g12466.t1 Dapi23g00128 128
23 2651178 2654830 - h2tg000064l.g12467.t1 Dapi23g00129 129
23 2688273 2689698 - h2tg000064l.g12468.t1 Dapi23g00130 130
3 30218711 30224041 + XM_043763612.1 Ecan3g01920 1920
3 30225463 30229315 + XM_043764109.1 Ecan3g01921 1921
3 30235688 30236597 + XM_043762719.1 Ecan3g01922 1922
3 30257443 30263134 + XM_043765193.1 Ecan3g01924 1924
3 30265053 30272542 - XM_043766339.1 Ecan3g01926 1926
3 30293021 30303908 + XM_043766611.1 Ecan3g01929 1929
6 44916815 44927710 + evm.model.ctg1315.11 Enbr6g01272 1272
6 44964830 44965356 + evm.model.ctg1315.12 Enbr6g01273 1273
6 44984081 44987071 + evm.model.ctg1315.13 Enbr6g01274 1274
6 44991022 44999002 - evm.model.ctg1315.14 Enbr6g01275 1275
6 45141070 45149707 + evm.model.ctg2512.1 Enbr6g01277 1277
1 2232103 2235957 + FliAMIRv0_Chr01g0001201 Fli1g00122 122
1 2249606 2287846 - FliAMIRv0_Chr01g0001212 Fli1g00124 124
1 2308059 2308538 - FliAMIRv0_Chr01g0001231 Fli1g00126 126
1 2603477 2623390 - FliAMIRv0_Chr01g0001272 Fli1g00131 131
11 81169699 81177775 + FraAMIRv0_Chr11g0227901 Fra11g02768 2768
12 33287191 33294896 - FroAMIRv0_Chr12g0220961 Fro12g02548 2548
4 122249486 122257784 - FtrAMIRv0_Chr04g0132631 Ftr4g03829 3829
3 12602210 12610091 - GcoAMIRv0_Chr03g0158551 Glco3g00226 226
3 12637573 12645474 + GcoAMIRv0_Chr03g0158571 Glco3g00228 228
3 12691151 12694328 - GcoAMIRv0_Chr03g0158601 Glco3g00231 231
3 12753809 12754294 - GcoAMIRv0_Chr03g0158641 Glco3g00235 235
3 14018385 14020649 - GcoAMIRv0_Chr03g0158791 Glco3g00250 250
4 206246662 206247685 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0191271 Hean4g04485 4485
16 23476061 23489204 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0732031 Hean16g00820 820
16 23735173 23744148 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0732101 Hean16g00825 825
16 23759441 23764240 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0732111 Hean16g00826 826
16 23790931 23792027 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0732121 Hean16g00827 827
16 23805427 23811322 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0732161 Hean16g00828 828
10 4683348 4683841 + >Htub.h1tg000798l.g569.t1 Hetu10g00124 124
11 4091116 4091609 + >Htub.h1tg000030l.g160.t1 Hetu11g00106 106
12 4157489 4158045 + >Htub.h1tg000754l.g305.t1 Hetu12g00101 101
46 51039829 51046172 + >Htub.h1tg000086l.g401.t1 Hetu46g01006 1006
46 51072264 51072765 + >Htub.h1tg000086l.g400.t1 Hetu46g01007 1007
46 51087657 51090325 + >Htub.h1tg000086l.g398.t1 Hetu46g01009 1009
46 51094237 51101033 - >Htub.h1tg000086l.g396.t1 Hetu46g01011 1011
46 51314847 51329139 + >Htub.h1tg000086l.g389.t1 Hetu46g01018 1018
47 55608285 55614629 + >Htub.h1tg002868l.g35.t1 Hetu47g00982 982
47 55664841 55665342 + >Htub.h1tg002868l.g34.t1 Hetu47g00983 983
47 55731429 55734526 + >Htub.h1tg002868l.g33.t1 Hetu47g00984 984
47 55738592 55746359 - >Htub.h1tg002868l.g31.t1 Hetu47g00986 986
47 55845195 55859301 + >Htub.h1tg002868l.g30.t1 Hetu47g00987 987
48 47265028 47269866 + >Htub.h1tg001458l.g22.t1 Hetu48g00882 882
48 47312999 47313500 + >Htub.h1tg001458l.g23.t1 Hetu48g00883 883
48 47379551 47382640 + >Htub.h1tg001458l.g25.t1 Hetu48g00884 884
48 47386718 47393517 - >Htub.h1tg001458l.g26.t1 Hetu48g00885 885
48 47592462 47606821 + >Htub.h1tg001458l.g31.t1 Hetu48g00890 890
7 122165857 122171529 + CAI9294732.1 Laca7g02552 2552
1 1248710 1249186 + LmiAMIRv0_Chr01g0001431 Lomi1g00143 143
1 1257804 1259992 + LmiAMIRv0_Chr01g0001441 Lomi1g00144 144
1 1261921 1269636 - LmiAMIRv0_Chr01g0001451 Lomi1g00145 145
1 1274663 1282332 + LmiAMIRv0_Chr01g0001461 Lomi1g00146 146
2 50217688 50225461 - LmiAMIRv0_Chr02g0090461 Lomi2g04513 4513
2 50231681 50239135 + LmiAMIRv0_Chr02g0090471 Lomi2g04514 4514
2 50241361 50243582 - LmiAMIRv0_Chr02g0090481 Lomi2g04515 4515
2 50250548 50250992 - LmiAMIRv0_Chr02g0090491 Lomi2g04516 4516
2 50256092 50259641 - LmiAMIRv0_Chr02g0090501 Lomi2g04517 4517
2 50261742 50265215 - LmiAMIRv0_Chr02g0090511 Lomi2g04518 4518
7 166094218 166096618 + >KAJ0197833.1 Lssa7g03133 3133
7 166103201 166105786 + >KAJ0194862.1 Lssa7g03134 3134
7 166134223 166135084 + >KAJ0196358.1 Lssa7g03135 3135
7 166178950 166182742 + >KAJ0197531.1 Lssa7g03136 3136
7 166189082 166193956 - >KAJ0194677.1 Lssa7g03137 3137
7 166213194 166218970 + >KAJ0197209.1 Lssa7g03138 3138
17 4220968 4234137 - KAD3066474.1 Mimi17g00152 152
17 4240170 4255094 + KAD3066475.1 Mimi17g00153 153
17 4262174 4264759 - KAD3066476.1 Mimi17g00154 154
17 4318235 4322680 - KAD3066477.1 Mimi17g00155 155
4 5206257 5209145 + PdyAMIRv0_Chr04g0150601 Pdy4g00252 252
4 5213797 5221257 - PdyAMIRv0_Chr04g0150611 Pdy4g00253 253
4 5232511 5241475 + PdyAMIRv0_Chr04g0150621 Pdy4g00254 254
1 156018839 156026720 - PluAMIRv0_Chr01g0216271 Pslu1g21722 21722
1 156031624 156039362 + PluAMIRv0_Chr01g0216281 Pslu1g21723 21723
1 156042156 156044400 - PluAMIRv0_Chr01g0216291 Pslu1g21724 21724
1 156063880 156064359 - PluAMIRv0_Chr01g0216331 Pslu1g21728 21728
1 156070067 156073572 - PluAMIRv0_Chr01g0216341 Pslu1g21729 21729
1 156117773 156121269 - PluAMIRv0_Chr01g0216391 Pslu1g21734 21734
12 15924575 15930562 - SinAMIRv0_Chr12g0362461 Sain12g00682 682
12 15949494 15958157 + SinAMIRv0_Chr12g0362471 Sain12g00683 683
12 15960658 15962001 - SinAMIRv0_Chr12g0362481 Sain12g00684 684
12 15980417 15980921 - SinAMIRv0_Chr12g0362491 Sain12g00685 685
12 15992683 16004164 - SinAMIRv0_Chr12g0362511 Sain12g00687 687
12 16012155 16016312 - SinAMIRv0_Chr12g0362521 Sain12g00688 688
12 16018437 16020158 + SinAMIRv0_Chr12g0362531 Sain12g00689 689
7 3779941 3786369 + KAI3809795.1 Smso7g00215 215
7 3803300 3803778 + KAI3809797.1 Smso7g00217 217
7 3826363 3831185 + KAI3809798.1 Smso7g00218 218
7 3835944 3844959 - KAI3809799.1 Smso7g00219 219
7 3853814 3864977 + KAI3809801.1 Smso7g00221 221
26 45265001 45265472 - KAI3695502.1 Smso26g02017 2017
29 4077520 4078004 + KAI3675250.1 Smso29g00256 256
29 4104407 4107498 + KAI3675251.1 Smso29g00257 257
29 4111176 4122354 - KAI3675252.1 Smso29g00258 258
29 4127233 4138823 + KAI3675253.1 Smso29g00259 259
5 33037749 33047294 - transfrag31878.t01 Soca5g02956 2956
5 33054348 33062576 + transfrag31877.t01 Soca5g02957 2957
5 33064446 33070056 - asmbl_5701.p1 Soca5g02958 2958
5 33080522 33081077 - genewise40955.t01 Soca5g02959 2959
5 33112076 33118183 - transfrag31875.t01 Soca5g02960 2960
5 33119518 33125932 - transfrag31874.t05 Soca5g02962 2962
6 3991841 4000339 - Streb.6G001590.1 Stre6g00159 159
6 4011209 4018524 + Streb.6G001600.1 Stre6g00160 160
6 4020781 4027115 - Streb.6G001610.1 Stre6g00161 161
6 4033041 4034818 - Streb.6G001620.1 Stre6g00162 162
6 4112095 4116892 - Streb.6G001640.1 Stre6g00164 164
1 51761105 51761958 + >KAK1439874.1 Taer1g05697 5697
1 51776930 51784950 - >KAK1439877.1 Taer1g05701 5701
4 102474464 102480288 - TkA04G407660.1 Tako4g04440 4440
4 102512388 102516534 - TkA04G407800.1 Tako4g04443 4443
4 102569017 102572282 - TkA04G407950.2 Tako4g04446 4446
4 102587468 102589612 - TkA04G408010.1 Tako4g04447 4447
4 61642465 61648627 - TbA04G020110.1 Tamo4g03189 3189
4 61656972 61661452 + TbA04G020100.1 Tamo4g03190 3190
4 61664153 61667909 - TbA04G020090.1 Tamo4g03191 3191
4 61689541 61692867 - TbA04G020070.1 Tamo4g03192 3192
4 61719114 61721343 - TbA04G020000.1 Tamo4g03196 3196
       
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