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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00221 Cobi2g02330 Bial10g01358 Bial22g00953 . Dapi20g01849 . . . . . Smso28g00452 . . Fso1g02186 . . Fli3g00705 Stre1g04387 . . . . . . . . . . . . . . . . . . . . .
Hean1g00222 Cobi2g02332 Bial10g01359 Bial22g00954 Dapi4g01902 Dapi20g01850 Hetu1g00203 Hetu2g00243 Hetu3g00192 Amtr12g00542 Smso1g03657 Smso28g00451 Taer4g02480 Fro14g01336 Fso1g02189 Ftr2g00627 . Fli3g00704 Stre1g04389 Mimi16g02148 . . . . . . . . . . . . . . . . . . . .
Hean1g00223 . Bial10g01361 Bial22g00956 Dapi4g01903 Dapi20g01851 . . Hetu3g00193 Amtr12g00546 Smso1g03658 . Taer4g02481 . Fso1g02191 . Fra18g01489 Fli3g00702 Stre1g04390 . . . . . . . . . . . . . . . . . . . . .
Hean1g00224 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00225 . Bial10g01362 Bial22g00957 Dapi4g01904 Dapi20g01852 Hetu1g00204 Hetu2g00244 Hetu3g00194 Amtr12g00549 Smso1g03661 . . Fro14g01337 Fso1g02195 Ftr2g00625 Fra18g01490 Fli3g00701 Stre1g04391 Mimi16g02150 Hean11g02671 Cobi6g01001 Bial12g02766 Bial24g02609 Dapi4g01904 Dapi31g02100 Hetu32g02280 Hetu31g02255 Hetu33g02212 Amtr07g06232 . Smso20g01730 Taer4g00764 Fro13g01370 Fso12g01923 Ftr6g02335 Fra13g01408 Fli9g01419 Stre1g04391 Mimi16g02150
Hean1g00226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00229 . Bial10g01363 Bial22g00958 Dapi4g01905 Dapi20g01854 Hetu1g00205 Hetu2g00245 Hetu3g00195 Amtr12g00550 Smso1g03662 . . Fro14g01338 Fso1g02196 . Fra18g01491 Fli3g00700 Stre1g04392 . . . . . . . . . . . . . . . . . . . . .
Hean1g00230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 132265884 132270163 + AtrifAMIRv0_Chr07g0513791 Amtr07g06232 6232
12 17047914 17050777 - AtrifAMIRv0_Chr12g0722741 Amtr12g00542 542
12 17139255 17145412 - AtrifAMIRv0_Chr12g0722781 Amtr12g00546 546
12 17184628 17188193 - AtrifAMIRv0_Chr12g0722811 Amtr12g00549 549
12 17193977 17198669 - AtrifAMIRv0_Chr12g0722821 Amtr12g00550 550
10 13613126 13618537 - g86811.t1 Bial10g01358 1358
10 13621964 13623525 - g86810.t1 Bial10g01359 1359
10 13629557 13634510 - g86808.t1 Bial10g01361 1361
10 13637955 13640618 - g86807.t1 Bial10g01362 1362
10 13645113 13647830 - g86806.t1 Bial10g01363 1363
12 57732317 57734602 - g35965.t1 Bial12g02766 2766
22 9174303 9175422 - g147081.t1 Bial22g00953 953
22 9178073 9179632 - g147080.t1 Bial22g00954 954
22 9213368 9218272 - g147078.t1 Bial22g00956 956
22 9225892 9228049 - g147077.t1 Bial22g00957 957
22 9230807 9233426 - g147076.t1 Bial22g00958 958
24 56841262 56843508 - g68275.t1 Bial24g02609 2609
2 71068854 71070963 + h2tg000016l_1.g4916.t1 Cobi2g02330 2330
2 71090049 71091299 + h2tg000016l_1.g4914.t1 Cobi2g02332 2332
6 8047693 8049925 + h2tg000031l_1.g19314.t1 Cobi6g01001 1001
4 117466134 117468095 - h1tg000193l.g132834.t1 Dapi4g01902 1902
4 117482678 117485659 - h1tg000193l.g132833.t1 Dapi4g01903 1903
4 117491438 117493660 - h1tg000193l.g132832.t1 Dapi4g01904 1904
4 117577080 117582308 - h1tg000193l.g132831.t1 Dapi4g01905 1905
20 109195550 109197002 - h1tg000169l.g129548.t1 Dapi20g01849 1849
20 109202673 109204414 - h1tg000169l.g129547.t1 Dapi20g01850 1850
20 109299004 109301960 - h1tg000169l.g129546.t1 Dapi20g01851 1851
20 109321643 109324858 - h1tg000169l.g129545.t1 Dapi20g01852 1852
20 109409031 109415662 - h1tg000169l.g129543.t1 Dapi20g01854 1854
31 103516142 103520247 - h2tg000063l.g12185.t1 Dapi31g02100 2100
3 18814387 18907219 + FliAMIRv0_Chr03g0079691 Fli3g00700 700
3 18840284 18947873 + FliAMIRv0_Chr03g0079701 Fli3g00701 701
3 18960210 18962985 + FliAMIRv0_Chr03g0079711 Fli3g00702 702
3 18973576 18975901 + FliAMIRv0_Chr03g0079731 Fli3g00704 704
3 19060182 19063138 + FliAMIRv0_Chr03g0079741 Fli3g00705 705
9 71846313 71849441 - FliAMIRv0_Chr09g0221851 Fli9g01419 1419
13 42362864 42365766 + FraAMIRv0_Chr13g0267161 Fra13g01408 1408
18 59581310 59583958 - FraAMIRv0_Chr18g0356861 Fra18g01489 1489
18 59605722 59608847 - FraAMIRv0_Chr18g0356871 Fra18g01490 1490
18 59619131 59623176 - FraAMIRv0_Chr18g0356881 Fra18g01491 1491
13 23142631 23145794 - FroAMIRv0_Chr13g0235521 Fro13g01370 1370
14 21242265 21244632 - FroAMIRv0_Chr14g0254901 Fro14g01336 1336
14 21254750 21257822 - FroAMIRv0_Chr14g0254911 Fro14g01337 1337
14 21267819 21272161 - FroAMIRv0_Chr14g0254921 Fro14g01338 1338
1 62536257 62539010 - FsoAMIRv0_Chr01g0021851 Fso1g02186 2186
1 62568944 62571955 - FsoAMIRv0_Chr01g0021881 Fso1g02189 2189
1 62601885 62602305 - FsoAMIRv0_Chr01g0021901 Fso1g02191 2191
1 62652592 62655549 - FsoAMIRv0_Chr01g0021941 Fso1g02195 2195
1 62662469 62666527 - FsoAMIRv0_Chr01g0021951 Fso1g02196 2196
12 57720113 57723583 - FsoAMIRv0_Chr12g0308871 Fso12g01923 1923
2 11264931 11268013 + FtrAMIRv0_Chr02g0034921 Ftr2g00625 625
2 11287762 11289026 + FtrAMIRv0_Chr02g0034941 Ftr2g00627 627
6 90246082 90247891 - FtrAMIRv0_Chr06g0184831 Ftr6g02335 2335
1 6049010 6051044 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002551 Hean1g00221 221
1 6053357 6056089 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002561 Hean1g00222 222
1 6058926 6064214 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002571 Hean1g00223 223
1 6065375 6065940 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002581 Hean1g00224 224
1 6079667 6084261 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002591 Hean1g00225 225
1 6084811 6085692 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002601 Hean1g00226 226
1 6148275 6148619 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002611 Hean1g00227 227
1 6153007 6154103 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002621 Hean1g00228 228
1 6153501 6160812 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002631 Hean1g00229 229
1 6202754 6205850 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0002641 Hean1g00230 230
11 122246235 122251739 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0497881 Hean11g02671 2671
1 8115623 8117929 - >Htub.h1tg003050l.g470.t1 Hetu1g00203 203
1 8120520 8129053 - >Htub.h1tg003050l.g471.t1 Hetu1g00204 204
1 8133215 8137762 - >Htub.h1tg003050l.g472.t1 Hetu1g00205 205
2 8732795 8735747 - >Htub.h1tg000710l.g129.t1 Hetu2g00243 243
2 8738825 8748493 - >Htub.h1tg000710l.g130.t1 Hetu2g00244 244
2 8752982 8758446 - >Htub.h1tg000710l.g131.t1 Hetu2g00245 245
3 8052992 8055307 - >Htub.h1tg000727l.g93.t1 Hetu3g00192 192
3 8057911 8062877 - >Htub.h1tg000727l.g94.t1 Hetu3g00193 193
3 8063788 8067229 - >Htub.h1tg000727l.g95.t1 Hetu3g00194 194
3 8071684 8076603 - >Htub.h1tg000727l.g96.t1 Hetu3g00195 195
31 131500293 131503905 - >Htub.h1tg000896l.g464.t1 Hetu31g02255 2255
32 133464561 133469091 - >Htub.h1tg001196l.g167.t1 Hetu32g02280 2280
33 125406502 125411799 - >Htub.h1tg000866l.g342.t1 Hetu33g02212 2212
16 84177090 84183550 - KAD3338218.1 Mimi16g02148 2148
16 84206950 84215256 - KAD3338220.1 Mimi16g02150 2150
1 122379984 122381638 - KAI3829620.1 Smso1g03657 3657
1 122384711 122387392 - KAI3829621.1 Smso1g03658 3658
1 122400515 122404399 - KAI3829624.1 Smso1g03661 3661
1 122409588 122414064 - KAI3829625.1 Smso1g03662 3662
20 58504880 58509186 - KAI3742726.1 Smso20g01730 1730
28 12063152 12065770 + KAI3682731.1 Smso28g00451 451
28 12067288 12068985 + KAI3682732.1 Smso28g00452 452
1 130418379 130420207 - Streb.1G043870.1 Stre1g04387 4387
1 130440067 130441545 - Streb.1G043890.1 Stre1g04389 4389
1 130445348 130447169 - Streb.1G043900.1 Stre1g04390 4390
1 130448636 130452573 - Streb.1G043910.1 Stre1g04391 4391
1 130455012 130458809 - Streb.1G043920.1 Stre1g04392 4392
4 5788714 5792806 + >KAK1426695.1 Taer4g00764 764
4 55274664 55279986 + >KAK1428260.1 Taer4g02480 2480
4 55284254 55286155 + >KAK1428261.1 Taer4g02481 2481
       
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