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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00813 . . . . . Cich4g04230 Lssa7g03170 Laca7g02573 Tako4g04391 Tamo4g03154 . . . . . . . . . . . . . . . . . . Pdy4g00296 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00814 Sain12g00640 Ceso2g01567 Cati3g00827 . . Cich4g04229 Lssa7g03169 Laca7g02572 Tako4g04392 Tamo4g03155 Pslu1g21672 Lomi1g00174 Lomi2g04493 Enbr6g01329 Ecan3g01964 Soca5g02905 Glco3g00147 Artr3g12239 Aary5g02940 Aary13g03478 Aann4g01398 . . . . . . . Pdy4g00295 . . . . . . . . . . . . . . . . . . . . Cobi4g03259 Hean16g00943 Bial4g03570 . Dapi7g00170 Dapi23g00190 Hetu48g00805 Hetu46g00895 Hetu47g00875 Amtr01g04171 Smso7g00169 Smso29g00210 Taer1g05643 . Fso2g00202 Ftr4g03784 Fra11g02627 Fli1g00172 Stre6g00217 Mimi17g00207
Armi1g00816 Sain12g00642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00818 Sain12g00644 Ceso2g01568 Cati3g00828 . . Cich4g04222 Lssa7g03166 Laca7g02571 Tako4g04397 . Pslu1g21675 Lomi1g00171 . Enbr6g01325 Ecan3g01962 Soca5g02906 Glco3g00154 Artr3g12247 Aary5g02942 Aary13g03480 Aann4g01402 . . . . . . . Pdy4g00292 . Hean4g04412 . . Dapi16g02003 . . . . . . Smso26g01986 . . . . . . . Mimi9g01529 . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. Sain12g00647 . Cati3g00830 . . . . . . . Pslu1g21679 . Lomi2g04496 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00825 Sain12g00648 Ceso2g01571 Cati3g00831 . . Cich4g04218 Lssa7g03158 Laca7g02569 . Tamo4g03162 Pslu1g21680 Lomi1g00168 Lomi2g04498 Enbr6g01320 Ecan3g01960 Soca5g02911 Glco3g00161 Artr3g12270 Aary5g02945 Aary13g03482 Aann4g01409 . . . . . . . Pdy4g00289 . Hean4g04456 . . Dapi16g02004 Dapi23g00181 Hetu11g00127 Hetu12g00123 Hetu10g00145 . . Smso26g01989 Taer1g05647 . Fso2g00203 Ftr4g03787 Fra11g02631 Fli1g00168 Stre6g00212 Mimi9g01534 Cobi4g03264 Hean16g00929 . . Dapi7g00164 Dapi23g00181 Hetu48g00812 Hetu46g00900 Hetu47g00892 Amtr01g04185 Smso7g00174 Smso29g00215 Taer1g05647 . Fso2g00203 Ftr4g03787 Fra11g02631 Fli1g00168 Stre6g00212 Mimi17g00202
Armi1g00828 Sain12g00650 Ceso2g01572 Cati3g00835 . . Cich4g04216 Lssa7g03157 Laca7g02568 . Tamo4g03163 Pslu1g21684 Lomi1g00167 Lomi2g04499 Enbr6g01319 Ecan3g01958 Soca5g02913 Glco3g00163 Artr3g12279 Aary5g02946 Aary13g03483 Aann4g01410 . . . . . . . Pdy4g00288 . . . . . . . . . . . . . . . . . . . . Cobi4g03339 Hean16g00799 Bial4g03653 Bial16g02998 Dapi7g00086 Dapi23g00108 Hetu48g00914 Hetu46g01035 Hetu47g01011 Amtr01g04329 Smso7g00234 Smso29g00269 Taer1g05713 Fro12g02558 . . Fra11g02758 Fli1g00113 Stre6g00151 Mimi17g00142
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 71211532 71214843 + chr4g0785321 Aann4g01398 1398
4 71255420 71259465 - chr4g0785381 Aann4g01402 1402
4 71432003 71436329 - chr4g0785531 Aann4g01409 1409
4 71463395 71471222 + chr4g0785551 Aann4g01410 1410
5 179454500 179455841 - Aargg5g29400.1 Aary5g02940 2940
5 179692878 179695848 - Aargg5g29420.1 Aary5g02942 2942
5 179941981 179945368 - Aargg5g29450.1 Aary5g02945 2945
5 179999383 180006497 + Aargg5g29460.1 Aary5g02946 2946
13 209063281 209065691 - Aargg13g34780.1 Aary13g03478 3478
13 209191183 209194202 - Aargg13g34800.1 Aary13g03480 3480
13 209574330 209577748 - Aargg13g34820.1 Aary13g03482 3482
13 209609014 209616497 + Aargg13g34830.1 Aary13g03483 3483
1 112268763 112271295 - AtrifAMIRv0_Chr01g0041711 Amtr01g04171 4171
1 112628208 112632042 - AtrifAMIRv0_Chr01g0041851 Amtr01g04185 4185
1 116768337 116777946 - AtrifAMIRv0_Chr01g0043291 Amtr01g04329 4329
1 21091877 21092419 - AmiAMIRv0_Chr01g0008131 Armi1g00813 813
1 21093244 21095991 - AmiAMIRv0_Chr01g0008141 Armi1g00814 814
1 21139932 21141218 - AmiAMIRv0_Chr01g0008161 Armi1g00816 816
1 21168962 21170023 - AmiAMIRv0_Chr01g0008171 Armi1g00817 817
1 21215308 21220173 - AmiAMIRv0_Chr01g0008181 Armi1g00818 818
1 21659175 21662752 - AmiAMIRv0_Chr01g0008251 Armi1g00825 825
1 21728273 21739679 + AmiAMIRv0_Chr01g0008281 Armi1g00828 828
3 420953997 421104705 - AtridAMIRv0_Chr03g0429751 Artr3g12239 12239
3 421329637 421332869 - AtridAMIRv0_Chr03g0429831 Artr3g12247 12247
3 421907689 421911216 - AtridAMIRv0_Chr03g0430061 Artr3g12270 12270
3 422145405 422152744 + AtridAMIRv0_Chr03g0430151 Artr3g12279 12279
4 80861667 80866638 - g43409.t1 Bial4g03570 3570
4 82201492 82214377 - g62269.t1 Bial4g03653 3653
16 75114889 75128157 - g59529.t1 Bial16g02998 2998
3 9644902 9651792 - CtAH03T0059300.1 Cati3g00827 827
3 9680413 9686204 - CtAH03T0059400.1 Cati3g00828 828
3 9785279 9804015 + CtAH03T0059600.1 Cati3g00830 830
3 9835107 9845455 - CtAH03T0059700.1 Cati3g00831 831
3 9892887 9903074 + CtAH03T0059900.1 Cati3g00835 835
2 33287854 33290925 - >KAJ9560907.1 Ceso2g01567 1567
2 33322862 33328186 - >KAJ9560908.1 Ceso2g01568 1568
2 33454038 33457864 - >KAJ9560978.1 Ceso2g01571 1571
2 33479387 33489130 + >KAJ9561003.1 Ceso2g01572 1572
4 123382615 123387198 - KAI3753351.1 Cich4g04216 4216
4 123518357 123522327 + KAI3753353.1 Cich4g04218 4218
4 123755427 123757791 + KAI3753357.1 Cich4g04222 4222
4 123956797 123958860 + KAI3753364.1 Cich4g04229 4229
4 123959596 123960132 + KAI3753365.1 Cich4g04230 4230
4 82362120 82365919 - h2tg000064l_1.g27474.t1 Cobi4g03259 3259
4 82417337 82423457 - h2tg000064l_1.g27479.t1 Cobi4g03264 3264
4 83679016 83688851 - h2tg000064l_1.g27554.t1 Cobi4g03339 3339
7 1616836 1622413 + h1tg000136l.g124578.t1 Dapi7g00086 86
7 3296081 3299744 + h1tg000136l.g124500.t1 Dapi7g00164 164
7 3378282 3381017 + h1tg000136l.g124494.t1 Dapi7g00170 170
16 78349829 78353791 - h1tg000026l.g56956.t1 Dapi16g02003 2003
16 78535721 78540671 - h1tg000026l.g56957.t1 Dapi16g02004 2004
23 2277409 2287844 + h2tg000064l.g12446.t1 Dapi23g00108 108
23 3789013 3792609 + h2tg000064l.g12519.t1 Dapi23g00181 181
23 3920373 3923089 + h2tg000064l.g12528.t1 Dapi23g00190 190
3 30584382 30594198 - XM_043766372.1 Ecan3g01958 1958
3 30623771 30627884 + XM_043763345.1 Ecan3g01960 1960
3 30682506 30685355 + XM_043764860.1 Ecan3g01962 1962
3 30698592 30700578 + XM_043764640.1 Ecan3g01964 1964
6 46071509 46097297 - evm.model.ctg2503.1 Enbr6g01319 1319
6 46129725 46133199 + evm.model.ctg2503.3 Enbr6g01320 1320
6 46294626 46297169 + evm.model.ctg1671.1 Enbr6g01325 1325
6 46356469 46360100 + evm.model.ctg1671.5 Enbr6g01329 1329
1 1983819 1984800 + FliAMIRv0_Chr01g0001111 Fli1g00113 113
1 3378860 3382487 + FliAMIRv0_Chr01g0001631 Fli1g00168 168
1 3477267 3479566 + FliAMIRv0_Chr01g0001671 Fli1g00172 172
11 79780066 79782352 - FraAMIRv0_Chr11g0226491 Fra11g02627 2627
11 79825241 79828834 - FraAMIRv0_Chr11g0226531 Fra11g02631 2631
11 81061832 81069787 + FraAMIRv0_Chr11g0227801 Fra11g02758 2758
12 33411936 33420854 - FroAMIRv0_Chr12g0221061 Fro12g02558 2558
2 2779860 2782523 - FsoAMIRv0_Chr02g0030211 Fso2g00202 202
2 2844255 2847806 - FsoAMIRv0_Chr02g0030221 Fso2g00203 203
4 121737737 121739922 - FtrAMIRv0_Chr04g0132181 Ftr4g03784 3784
4 121791750 121795345 - FtrAMIRv0_Chr04g0132211 Ftr4g03787 3787
3 9670591 9677625 - GcoAMIRv0_Chr03g0157761 Glco3g00147 147
3 9815768 9818751 - GcoAMIRv0_Chr03g0157831 Glco3g00154 154
3 10150216 10153175 - GcoAMIRv0_Chr03g0157901 Glco3g00161 161
3 10263046 10270476 + GcoAMIRv0_Chr03g0157921 Glco3g00163 163
4 205221591 205226479 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0190411 Hean4g04412 4412
4 205870316 205881193 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0190961 Hean4g04456 4456
16 22519083 22530709 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0731781 Hean16g00799 799
16 29267830 29273386 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0733451 Hean16g00929 929
16 29725481 29730463 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0733621 Hean16g00943 943
10 5443140 5447374 + >Htub.h1tg000798l.g547.t1 Hetu10g00145 145
11 4616357 4620574 + >Htub.h1tg000030l.g181.t1 Hetu11g00127 127
12 4682334 4686515 + >Htub.h1tg000754l.g327.t1 Hetu12g00123 123
46 44569399 44571996 - >Htub.h1tg000086l.g516.t1 Hetu46g00895 895
46 45055897 45059921 - >Htub.h1tg000086l.g511.t1 Hetu46g00900 900
46 52426038 52437202 - >Htub.h1tg000086l.g372.t1 Hetu46g01035 1035
47 49071681 49072560 - >Htub.h1tg001955l.g97.t1 Hetu47g00875 875
47 49637807 49642298 - >Htub.h1tg003760l.g418.t1 Hetu47g00892 892
47 56975260 56989001 - >Htub.h1tg003063l.g18.t1 Hetu47g01011 1011
48 41737337 41739934 - >Htub.h1tg002973l.g349.t1 Hetu48g00805 805
48 42231675 42235930 - >Htub.h1tg002973l.g342.t1 Hetu48g00812 812
48 49039090 49050184 - >Htub.h1tg001458l.g55.t1 Hetu48g00914 914
7 122869329 122874331 - CAI9294749.1 Laca7g02568 2568
7 122992096 122996394 + CAI9294750.1 Laca7g02569 2569
7 123696798 123699480 + CAI9294752.1 Laca7g02571 2571
7 123797100 123798520 + CAI9294753.1 Laca7g02572 2572
7 123798936 123799457 + CAI9294754.1 Laca7g02573 2573
1 1483233 1484020 - LmiAMIRv0_Chr01g0001671 Lomi1g00167 167
1 1501866 1505229 + LmiAMIRv0_Chr01g0001681 Lomi1g00168 168
1 1535431 1538782 + LmiAMIRv0_Chr01g0001711 Lomi1g00171 171
1 1552959 1554549 + LmiAMIRv0_Chr01g0001741 Lomi1g00174 174
2 49991893 49993708 - LmiAMIRv0_Chr02g0090261 Lomi2g04493 4493
2 50020677 50020928 + LmiAMIRv0_Chr02g0090291 Lomi2g04496 4496
2 50032539 50035976 - LmiAMIRv0_Chr02g0090311 Lomi2g04498 4498
2 50049795 50056448 + LmiAMIRv0_Chr02g0090321 Lomi2g04499 4499
7 167066919 167072100 - >KAJ0195418.1 Lssa7g03157 3157
7 167215859 167219935 + >KAJ0197929.1 Lssa7g03158 3158
7 168049799 168052463 + >KAJ0195102.1 Lssa7g03166 3166
7 168186317 168187901 + >KAJ0195416.1 Lssa7g03169 3169
7 168188100 168188621 + >KAJ0196901.1 Lssa7g03170 3170
9 55420951 55428069 - KAD5318264.1 Mimi9g01529 1529
9 55685916 55691892 - KAD5318269.1 Mimi9g01534 1534
17 4019988 4029973 + KAD3066464.1 Mimi17g00142 142
17 5427552 5433061 + KAD3066524.1 Mimi17g00202 202
17 5527291 5532634 + KAD3066529.1 Mimi17g00207 207
4 5987615 5996371 - PdyAMIRv0_Chr04g0150961 Pdy4g00288 288
4 6031943 6036919 + PdyAMIRv0_Chr04g0150971 Pdy4g00289 289
4 6106945 6109763 + PdyAMIRv0_Chr04g0151001 Pdy4g00292 292
4 6128305 6130331 + PdyAMIRv0_Chr04g0151031 Pdy4g00295 295
4 6135285 6135836 + PdyAMIRv0_Chr04g0151041 Pdy4g00296 296
1 155624249 155625941 - PluAMIRv0_Chr01g0215771 Pslu1g21672 21672
1 155651861 155654948 - PluAMIRv0_Chr01g0215801 Pslu1g21675 21675
1 155715830 155716084 + PluAMIRv0_Chr01g0215841 Pslu1g21679 21679
1 155732763 155736165 - PluAMIRv0_Chr01g0215851 Pslu1g21680 21680
1 155759291 155766816 + PluAMIRv0_Chr01g0215891 Pslu1g21684 21684
12 14817662 14819224 - SinAMIRv0_Chr12g0362041 Sain12g00640 640
12 14846357 14847481 - SinAMIRv0_Chr12g0362061 Sain12g00642 642
12 14895975 14900299 - SinAMIRv0_Chr12g0362081 Sain12g00644 644
12 15024823 15025062 + SinAMIRv0_Chr12g0362111 Sain12g00647 647
12 15160574 15164159 - SinAMIRv0_Chr12g0362121 Sain12g00648 648
12 15235087 15243181 + SinAMIRv0_Chr12g0362141 Sain12g00650 650
7 2983338 2985970 - KAI3809749.1 Smso7g00169 169
7 3069915 3073577 - KAI3809754.1 Smso7g00174 174
7 4083279 4091905 - KAI3809814.1 Smso7g00234 234
26 43116082 43119049 - KAI3695471.1 Smso26g01986 1986
26 43452020 43456138 - KAI3695474.1 Smso26g01989 1989
29 3338425 3340496 - KAI3675204.1 Smso29g00210 210
29 3410633 3414030 - KAI3675209.1 Smso29g00215 215
29 4398152 4410407 - KAI3675263.1 Smso29g00269 269
5 32348809 32351596 - transfrag31919.t01 Soca5g02905 2905
5 32371046 32374307 - transfrag31918.t01 Soca5g02906 2906
5 32449063 32453116 - asmbl_5706.p1 Soca5g02911 2911
5 32490067 32498967 + augustus47711.t02 Soca5g02913 2913
6 3796846 3803148 + Streb.6G001510.1 Stre6g00151 151
6 5559017 5563539 + Streb.6G002120.1 Stre6g00212 212
6 5824485 5827117 + Streb.6G002170.1 Stre6g00217 217
1 51348516 51351034 - >KAK1439821.1 Taer1g05643 5643
1 51399470 51402793 - >KAK1439825.1 Taer1g05647 5647
1 51902347 51909804 - >KAK1439889.1 Taer1g05713 5713
4 100957993 100958556 - TkA04G401500.1 Tako4g04391 4391
4 100959404 100961629 - TkA04G401510.1 Tako4g04392 4392
4 101074591 101080003 - TkA04G401880.1 Tako4g04397 4397
4 60877978 60878541 - TbA04G020890.1 Tamo4g03154 3154
4 60879469 60881780 - TbA04G020880.1 Tamo4g03155 3155
4 61210353 61213479 - TbA04G020620.1 Tamo4g03162 3162
4 61250441 61255730 + TbA04G020610.1 Tamo4g03163 3163
       
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