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AGRP

Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00106 Sain12g00104 Ceso2g03219 Cati3g00141 Ccar2g02310 Cien5g03546 . Lssa7g03789 . Tako4g03066 Tamo4g02134 . . . Enbr6g03562 Ecan3g00195 Soca5g05355 Glco3g01578 Artr3g10746 Aary5g02670 Aary13g03118 Aann4g00715 . . . . . Chna2g00997 Cind3g02022 . . Hean6g02889 . . . . . . . . . . . . . . . . . . Cobi4g02791 Hean11g01527 Bial4g03009 Bial16g02440 Dapi7g00568 Dapi23g00587 . Hetu31g00972 Hetu33g01091 Amtr02g06556 Smso7g00505 Smso29g00656 Taer1g05933 Fro12g02154 Fso2g00467 Ftr4g03462 Fra11g02331 Fli1g00529 Stre6g00716 Mimi17g00809
Armi1g00107 Sain12g00105 . Cati3g00143 Ccar2g02309 Cien5g03547 Cich4g04856 Lssa7g03790 . Tako4g03067 . Pslu1g20712 . Lomi2g04181 Enbr6g03568 Ecan3g00187 Soca5g05354 . Artr3g10745 . Aary13g03116 Aann4g00714 . . . . . Chna2g00998 Cind3g02021 Pdy4g00862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00108 Sain12g00106 Ceso2g03223 Cati3g00145 Ccar2g02308 Cien5g03548 Cich4g04861 Lssa7g03791 Laca7g03096 Tako4g03071 Tamo4g02137 Pslu1g20709 . Lomi2g04180 Enbr6g03570 Ecan3g00186 Soca5g05353 Glco3g01581 Artr3g10742 . Aary13g03115 Aann4g00712 Chma7g07193 . . . Chla6g05490 Chna2g00999 Cind3g02018 Pdy4g00863 . . . . . . . . . . . . . . . . . . . . Cobi4g02790 Hean11g01526 Bial4g03008 Bial16g02439 Dapi7g00569 Dapi23g00588 . Hetu31g00973 Hetu33g01092 Amtr02g06555 Smso7g00506 Smso29g00657 Taer1g05935 Fro12g02153 Fso2g00468 Ftr4g03461 Fra11g02330 Fli1g00530 Stre6g00717 Mimi17g00811
Armi1g00109 Sain12g00107 Ceso2g03224 Cati3g00146 Ccar2g02307 Cien5g03549 Cich4g04864 Lssa7g03797 Laca7g03097 Tako4g03074 Tamo4g02139 Pslu1g20708 . Lomi2g04179 . Ecan3g00185 Soca5g05352 Glco3g01585 Artr3g10737 . Aary13g03114 Aann4g00711 . . . . . Chna2g01000 Cind3g02017 . . . . . . . . . . . . . . . . . . . . . Cobi4g02789 Hean11g01519 Bial4g03007 Bial16g02438 Dapi7g00570 Dapi23g00590 . Hetu31g00977 Hetu33g01095 Amtr02g06554 Smso7g00508 Smso29g00658 . . . . . . Stre6g00720 Mimi17g00815
Armi1g00110 Sain12g00108 . Cati3g00147 . Cien5g03550 Cich4g04866 Lssa7g03798 Laca7g03099 Tako4g03075 Tamo4g02140 Pslu1g20707 . Lomi2g04178 . Ecan3g00184 Soca5g05351 Glco3g01586 Artr3g10731 . Aary13g03112 Aann4g00710 . . . . . Chna2g01002 Cind3g02015 Pdy4g00865 . . . . . . . . . . . . . . . . . . . . Cobi4g02787 Hean11g01518 . . . Dapi23g00591 . . Hetu33g01096 Amtr02g06552 Smso7g00509 Smso29g00659 Taer1g05938 Fro12g02151 Fso2g00470 Ftr4g03460 Fra11g02328 Fli1g00532 Stre6g00723 .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00113 Sain12g00112 Ceso2g03229 Cati3g00149 Ccar2g02304 Cien5g03585 Cich4g04890 Lssa7g03810 Laca7g03113 . Tamo4g02180 Pslu1g20691 . Lomi2g04176 . Ecan3g00177 Soca5g05333 Glco3g01603 . . . Aann4g00705 Chma7g07217 Chmo13g01174 Chmo14g01071 Chmo15g01015 . Chna2g01008 Cind3g02008 Pdy4g00877 . . . . . . . . . . . . . . . . . . . . Cobi4g02771 Hean11g01495 Bial4g03003 Bial16g02435 Dapi7g00575 . Hetu32g01065 . Hetu33g01134 Amtr02g06534 Smso7g00522 Smso29g00680 Taer1g05941 Fro12g02149 Fso2g00473 Ftr4g03455 Fra11g02325 Fli1g00536 . .
Armi1g00114 Sain12g00113 . Cati3g00152 Ccar2g02303 Cien5g03587 Cich4g04891 Lssa7g03811 Laca7g03114 . Tamo4g02183 Pslu1g20690 . Lomi2g04175 . Ecan3g00176 Soca5g05332 Glco3g01610 Artr3g10701 . . Aann4g00701 Chma7g07221 Chmo13g01176 Chmo14g01074 Chmo15g01019 . Chna2g01010 Cind3g02005 Pdy4g00878 . . . . . . . . . . . . . . . . . . . . Cobi4g02770 Hean11g01493 Bial4g03002 Bial16g02434 Dapi7g00576 Dapi23g00596 Hetu32g01066 Hetu31g01016 Hetu33g01136 Amtr02g06533 Smso7g00523 Smso29g00681 Taer1g05942 Fro12g02148 Fso2g00474 Ftr4g03452 Fra11g02324 Fli1g00538 Stre6g00726 Mimi17g00822
Armi1g00115 Sain12g00115 Ceso2g03230 . Ccar2g02302 Cien5g03588 Cich4g04892 Lssa7g03812 Laca7g03115 . Tamo4g02184 Pslu1g20684 . Lomi2g04174 . Ecan3g00175 Soca5g05331 Glco3g01611 Artr3g10700 . . Aann4g00700 Chma7g07220 Chmo13g01177 Chmo14g01075 Chmo15g01020 . Chna2g01011 Cind3g02004 . . . . . . . . . . . . . . . . . . . . . Cobi4g02769 Hean11g01491 Bial4g03001 Bial16g02433 Dapi7g00577 Dapi23g00597 Hetu32g01067 Hetu31g01021 Hetu33g01137 Amtr02g06532 Smso7g00525 Smso29g00682 Taer1g05943 Fro12g02147 Fso2g00475 Ftr4g03451 Fra11g02323 Fli1g00540 Stre6g00727 Mimi17g00824
Armi1g00117 Sain12g00116 Ceso2g03231 Cati3g00153 Ccar2g02301 Cien5g03589 Cich4g04893 Lssa7g03814 Laca7g03116 . . Pslu1g20683 . Lomi2g04173 . Ecan3g00174 Soca5g05330 Glco3g01613 . . . Aann4g00698 Chma7g07223 Chmo13g01179 Chmo14g01078 Chmo15g01026 . Chna2g01012 Cind3g02001 Pdy4g00881 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 47091052 47093660 + chr4g0764141 Aann4g00698 698
4 47187799 47194205 - chr4g0764171 Aann4g00700 700
4 47195132 47201756 - chr4g0764181 Aann4g00701 701
4 47375790 47382817 - chr4g0764321 Aann4g00705 705
4 47623812 47628445 + chr4g0764561 Aann4g00710 710
4 47742727 47750300 - chr4g0764571 Aann4g00711 711
4 47801397 47804518 - chr4g0764601 Aann4g00712 712
4 47850730 47852748 - chr4g0764631 Aann4g00714 714
4 47855957 47861892 - chr4g0764641 Aann4g00715 715
5 154550513 154556747 - Aargg5g26700.1 Aary5g02670 2670
13 183745361 183745747 + Aargg13g31120.1 Aary13g03112 3112
13 183830169 183838571 - Aargg13g31140.1 Aary13g03114 3114
13 183890030 183891920 - Aargg13g31150.1 Aary13g03115 3115
13 183963643 183967477 - Aargg13g31160.1 Aary13g03116 3116
13 183990386 183996798 - Aargg13g31180.1 Aary13g03118 3118
2 118315010 118316783 - AtrifAMIRv0_Chr02g0161281 Amtr02g06532 6532
2 118349484 118353807 - AtrifAMIRv0_Chr02g0161291 Amtr02g06533 6533
2 118356179 118363865 - AtrifAMIRv0_Chr02g0161301 Amtr02g06534 6534
2 118852088 118852474 + AtrifAMIRv0_Chr02g0161481 Amtr02g06552 6552
2 118880802 118887195 - AtrifAMIRv0_Chr02g0161501 Amtr02g06554 6554
2 118953039 118954838 - AtrifAMIRv0_Chr02g0161511 Amtr02g06555 6555
2 118974845 118979222 - AtrifAMIRv0_Chr02g0161521 Amtr02g06556 6556
1 1606035 1612765 + AmiAMIRv0_Chr01g0001061 Armi1g00106 106
1 1618274 1621596 + AmiAMIRv0_Chr01g0001071 Armi1g00107 107
1 1649750 1651260 + AmiAMIRv0_Chr01g0001081 Armi1g00108 108
1 1686551 1697516 + AmiAMIRv0_Chr01g0001091 Armi1g00109 109
1 1707281 1708095 - AmiAMIRv0_Chr01g0001101 Armi1g00110 110
1 1821624 1826380 + AmiAMIRv0_Chr01g0001131 Armi1g00113 113
1 1829017 1833219 + AmiAMIRv0_Chr01g0001141 Armi1g00114 114
1 1845575 1848742 + AmiAMIRv0_Chr01g0001151 Armi1g00115 115
1 2280797 2284833 - AmiAMIRv0_Chr01g0001171 Armi1g00117 117
3 361164758 361166054 - AtridAMIRv0_Chr03g0414361 Artr3g10700 10700
3 361191886 361195875 - AtridAMIRv0_Chr03g0414371 Artr3g10701 10701
3 362169990 362170382 + AtridAMIRv0_Chr03g0414671 Artr3g10731 10731
3 362208044 362214508 - AtridAMIRv0_Chr03g0414731 Artr3g10737 10737
3 362377246 362379312 - AtridAMIRv0_Chr03g0414781 Artr3g10742 10742
3 362643756 362647726 - AtridAMIRv0_Chr03g0414811 Artr3g10745 10745
3 362652387 362657480 - AtridAMIRv0_Chr03g0414821 Artr3g10746 10746
4 68890824 68892340 - g55992.t1 Bial4g03001 3001
4 68923241 68932458 - g55993.t1 Bial4g03002 3002
4 68935255 68938626 - g55994.t1 Bial4g03003 3003
4 69009207 69013557 - g55998.t1 Bial4g03007 3007
4 69038908 69040998 - g55999.t1 Bial4g03008 3008
4 69051406 69053709 - g56000.t1 Bial4g03009 3009
16 63579983 63581499 - g150149.t1 Bial16g02433 2433
16 63613067 63622807 - g150148.t1 Bial16g02434 2434
16 63625488 63629416 - g150147.t1 Bial16g02435 2435
16 63714521 63718806 - g150144.t1 Bial16g02438 2438
16 63741776 63743911 - g150143.t1 Bial16g02439 2439
16 63783113 63785524 - g150142.t1 Bial16g02440 2440
3 789871 800010 - CtAH03T0007800.1 Cati3g00141 141
3 793266 809220 + CtAH03T0007900.2 Cati3g00143 143
3 834346 836941 + CtAH03T0008000.1 Cati3g00145 145
3 856067 867979 + CtAH03T0008100.1 Cati3g00146 146
3 881971 882348 - CtAH03T0008200.1 Cati3g00147 147
3 904015 966106 + CtAH03T0008300.1 Cati3g00149 149
3 969617 976024 + CtAH03T0008500.1 Cati3g00152 152
3 1112870 1117208 - CtAH03T0008600.1 Cati3g00153 153
2 70136928 70140959 + gnl|WGS:LEKV|Ccrd_011352.mRNA.1_mrna Ccar2g02301 2301
2 70148884 70151235 - gnl|WGS:LEKV|Ccrd_011353.mRNA.1_mrna Ccar2g02302 2302
2 70163763 70168365 - gnl|WGS:LEKV|Ccrd_011354.mRNA.1_mrna Ccar2g02303 2303
2 70173984 70177905 - gnl|WGS:LEKV|Ccrd_011355.mRNA.1_mrna Ccar2g02304 2304
2 70228612 70239544 - gnl|WGS:LEKV|Ccrd_011358.mRNA.1_mrna Ccar2g02307 2307
2 70255055 70256738 - gnl|WGS:LEKV|Ccrd_011359.mRNA.1_mrna Ccar2g02308 2308
2 70265400 70268225 - gnl|WGS:LEKV|Ccrd_011360.mRNA.1_mrna Ccar2g02309 2309
2 70269387 70281565 - gnl|WGS:LEKV|Ccrd_011361.mRNA.1_mrna Ccar2g02310 2310
2 81113524 81119189 + >KAJ9562646.1 Ceso2g03219 3219
2 81167734 81169685 + >KAJ9562602.1 Ceso2g03223 3223
2 81193829 81205545 + >KAJ9562603.1 Ceso2g03224 3224
2 81323298 81328186 + >KAJ9562945.1 Ceso2g03229 3229
2 81351385 81353801 + >KAJ9562944.1 Ceso2g03230 3230
2 81362305 81365676 - >KAJ9562950.1 Ceso2g03231 3231
6 216280162 216282300 + ClaG1_Chr06g0427371 Chla6g05490 5490
7 246246106 246247963 - CmaNakai_Chr07g0694951 Chma7g07193 7193
7 247392825 247393307 + CmaNakai_Chr07g0695191 Chma7g07217 7217
7 247583535 247584831 - CmaNakai_Chr07g0695221 Chma7g07220 7220
7 247687950 247691825 + CmaNakai_Chr07g0695231 Chma7g07221 7221
7 247786737 247787414 - CmaNakai_Chr07g0695251 Chma7g07223 7223
13 60416994 60417444 + evm.model.scaffold_10828.7 Chmo13g01174 1174
13 60727386 60731074 + evm.model.scaffold_10828.11 Chmo13g01176 1176
13 60767026 60768434 + evm.model.scaffold_10828.12 Chmo13g01177 1177
13 61075995 61080420 - evm.model.scaffold_10828.22 Chmo13g01179 1179
14 54852169 54854496 + evm.model.scaffold_9850.15 Chmo14g01071 1071
14 55289964 55294876 + evm.model.scaffold_9850.31 Chmo14g01074 1074
14 55324805 55326157 + evm.model.scaffold_9850.33.1 Chmo14g01075 1075
14 55540665 55544711 - evm.model.scaffold_9850.38 Chmo14g01078 1078
15 58845394 58851483 + evm.model.scaffold_3415.11 Chmo15g01015 1015
15 59159618 59164571 + evm.model.scaffold_3415.32 Chmo15g01019 1019
15 59183037 59184389 + evm.model.scaffold_3415.34.1 Chmo15g01020 1020
15 59345978 59349779 - evm.model.scaffold_3415.43 Chmo15g01026 1026
2 77794440 77799875 + Cn0814780 Chna2g00997 997
2 77803123 77806990 + Cn0814790 Chna2g00998 998
2 78060956 78062956 + Cn0814810 Chna2g00999 999
2 78109064 78116078 + Cn0814820 Chna2g01000 1000
2 78276584 78276955 - Cn0814840 Chna2g01002 1002
2 79298946 79302149 + Cn0814930 Chna2g01008 1008
2 79460934 79466317 + Cn0814960 Chna2g01010 1010
2 79484704 79486081 + Cn0814970 Chna2g01011 1011
2 79674902 79678980 - Cn0815030 Chna2g01012 1012
4 137410472 137411414 + KAI3753991.1 Cich4g04856 4856
4 137440879 137442193 + KAI3753996.1 Cich4g04861 4861
4 137572983 137577348 + KAI3753999.1 Cich4g04864 4864
4 137604748 137605140 - KAI3754001.1 Cich4g04866 4866
4 138538836 138540799 + KAI3754025.1 Cich4g04890 4890
4 138550526 138553031 + KAI3754026.1 Cich4g04891 4891
4 138574053 138575334 + KAI3754027.1 Cich4g04892 4892
4 138660754 138664428 - KAI3754028.1 Cich4g04893 4893
5 81325497 81329956 + KAI3510066.1 Cien5g03546 3546
5 81331527 81332539 + KAI3510067.1 Cien5g03547 3547
5 81355952 81357260 + KAI3510068.1 Cien5g03548 3548
5 81407235 81411482 + KAI3510069.1 Cien5g03549 3549
5 81432580 81432972 - KAI3510070.1 Cien5g03550 3550
5 82116275 82118304 + KAI3510105.1 Cien5g03585 3585
5 82135486 82138005 + KAI3510107.1 Cien5g03587 3587
5 82149934 82151225 + KAI3510108.1 Cien5g03588 3588
5 82184644 82187934 - KAI3510109.1 Cien5g03589 3589
3 308618784 308620517 + D.indicum_Contig21_G00045.t1 Cind3g02001 2001
3 308767134 308768314 - D.indicum_Contig21_G00048.t1 Cind3g02004 2004
3 308779064 308783457 - D.indicum_Contig21_G00049.t1 Cind3g02005 2005
3 309096645 309099626 - D.indicum_Contig21_G00052.t1 Cind3g02008 2008
3 309671601 309672002 + D.indicum_Contig21_G00059.t1 Cind3g02015 2015
3 309931019 309937871 - D.indicum_Contig21_G00061.t1 Cind3g02017 2017
3 309998831 310000674 - D.indicum_Contig21_G00062.t1 Cind3g02018 2018
3 310267192 310270763 - D.indicum_Contig21_G00065.t1 Cind3g02021 2021
3 310273629 310278522 - D.indicum_Contig21_G00066.t1 Cind3g02022 2022
4 75180814 75182261 - h2tg000009l_1.g42510.t1 Cobi4g02769 2769
4 75212713 75216206 - h2tg000009l_1.g42509.t1 Cobi4g02770 2770
4 75219204 75222202 - h2tg000009l_1.g42508.t1 Cobi4g02771 2771
4 75416670 75417020 + h2tg000009l_1.g42492.t1 Cobi4g02787 2787
4 75432772 75436938 - h2tg000009l_1.g42490.t1 Cobi4g02789 2789
4 75480612 75482641 - h2tg000009l_1.g42489.t1 Cobi4g02790 2790
4 75497797 75501789 - h2tg000009l_1.g42488.t1 Cobi4g02791 2791
7 12091453 12095079 + h1tg000030l.g77158.t1 Dapi7g00568 568
7 12115058 12116565 + h1tg000030l.g77159.t1 Dapi7g00569 569
7 12176574 12183970 + h1tg000030l.g77160.t1 Dapi7g00570 570
7 12298377 12301560 + h1tg000030l.g77165.t1 Dapi7g00575 575
7 12304179 12307119 + h1tg000030l.g77166.t1 Dapi7g00576 576
7 12313326 12315765 + h1tg000030l.g77167.t1 Dapi7g00577 577
23 12910598 12913968 + h2tg000020l.g165112.t1 Dapi23g00587 587
23 12980025 12981642 + h2tg000020l.g165111.t1 Dapi23g00588 588
23 13015667 13025632 + h2tg000020l.g165109.t1 Dapi23g00590 590
23 13049405 13049767 - h2tg000020l.g165108.t1 Dapi23g00591 591
23 13129840 13138696 + h2tg000020l.g165103.t1 Dapi23g00596 596
23 13145432 13147874 + h2tg000020l.g165102.t1 Dapi23g00597 597
3 1691753 1694971 + XM_043766205.1 Ecan3g00174 174
3 1701429 1703187 - XM_043766854.1 Ecan3g00175 175
3 1709770 1714923 - XM_043765720.1 Ecan3g00176 176
3 1727778 1730967 - XM_043766304.1 Ecan3g00177 177
3 1899914 1900459 + XM_043767002.1 Ecan3g00184 184
3 1907981 1916121 - XM_043766759.1 Ecan3g00185 185
3 1929406 1931671 - XM_043765845.1 Ecan3g00186 186
3 1978986 1983199 - XM_043765919.1 Ecan3g00187 187
3 2204047 2210977 - XM_043766294.1 Ecan3g00195 195
6 131683323 131689894 + evm.model.ctg3649.3 Enbr6g03562 3562
6 132008204 132012396 + evm.model.ctg1703.2 Enbr6g03568 3568
6 132087702 132089751 + evm.model.ctg8310.1 Enbr6g03570 3570
1 10760781 10764150 + FliAMIRv0_Chr01g0005241 Fli1g00529 529
1 10780413 10781950 + FliAMIRv0_Chr01g0005251 Fli1g00530 530
1 10868048 10868434 - FliAMIRv0_Chr01g0005271 Fli1g00532 532
1 10983256 10987079 + FliAMIRv0_Chr01g0005311 Fli1g00536 536
1 11010367 11014403 + FliAMIRv0_Chr01g0005331 Fli1g00538 538
1 11065705 11067075 + FliAMIRv0_Chr01g0005351 Fli1g00540 540
11 76978465 76979802 - FraAMIRv0_Chr11g0223451 Fra11g02323 2323
11 76999069 77002387 - FraAMIRv0_Chr11g0223461 Fra11g02324 2324
11 77011801 77015144 - FraAMIRv0_Chr11g0223471 Fra11g02325 2325
11 77047171 77047557 + FraAMIRv0_Chr11g0223501 Fra11g02328 2328
11 77098882 77100442 - FraAMIRv0_Chr11g0223521 Fra11g02330 2330
11 77110236 77113578 - FraAMIRv0_Chr11g0223531 Fra11g02331 2331
12 28890128 28892304 - FroAMIRv0_Chr12g0216951 Fro12g02147 2147
12 28904321 28907685 - FroAMIRv0_Chr12g0216961 Fro12g02148 2148
12 28915361 28918530 - FroAMIRv0_Chr12g0216971 Fro12g02149 2149
12 28957225 28957608 + FroAMIRv0_Chr12g0216991 Fro12g02151 2151
12 28995754 28997253 - FroAMIRv0_Chr12g0217011 Fro12g02153 2153
12 29010562 29013954 - FroAMIRv0_Chr12g0217021 Fro12g02154 2154
2 6115078 6118433 + FsoAMIRv0_Chr02g0032861 Fso2g00467 467
2 6130369 6131855 + FsoAMIRv0_Chr02g0032871 Fso2g00468 468
2 6213517 6213900 - FsoAMIRv0_Chr02g0032891 Fso2g00470 470
2 6251071 6254864 + FsoAMIRv0_Chr02g0032921 Fso2g00473 473
2 6265514 6268849 + FsoAMIRv0_Chr02g0032931 Fso2g00474 474
2 6280452 6281799 + FsoAMIRv0_Chr02g0032941 Fso2g00475 475
4 117257194 117258529 - FtrAMIRv0_Chr04g0128851 Ftr4g03451 3451
4 117268759 117271993 - FtrAMIRv0_Chr04g0128861 Ftr4g03452 3452
4 117331355 117334756 - FtrAMIRv0_Chr04g0128891 Ftr4g03455 3455
4 117446427 117446813 + FtrAMIRv0_Chr04g0128941 Ftr4g03460 3460
4 117502699 117504259 - FtrAMIRv0_Chr04g0128951 Ftr4g03461 3461
4 117516987 117520384 - FtrAMIRv0_Chr04g0128961 Ftr4g03462 3462
3 101929515 101934714 + GcoAMIRv0_Chr03g0172071 Glco3g01578 1578
3 102426659 102428456 + GcoAMIRv0_Chr03g0172101 Glco3g01581 1581
3 102652095 102658834 + GcoAMIRv0_Chr03g0172141 Glco3g01585 1585
3 102857659 102858063 - GcoAMIRv0_Chr03g0172151 Glco3g01586 1586
3 104565637 104569058 + GcoAMIRv0_Chr03g0172321 Glco3g01603 1603
3 105004808 105009729 + GcoAMIRv0_Chr03g0172391 Glco3g01610 1610
3 105014940 105016219 + GcoAMIRv0_Chr03g0172401 Glco3g01611 1611
3 105180787 105184665 - GcoAMIRv0_Chr03g0172421 Glco3g01613 1613
6 103744245 103747831 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr06g0271331 Hean6g02889 2889
11 45210077 45212345 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483411 Hean11g01491 1491
11 45252176 45261061 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483431 Hean11g01493 1493
11 45268127 45271760 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483451 Hean11g01495 1495
11 46228982 46229613 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483761 Hean11g01518 1518
11 46350847 46358238 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483771 Hean11g01519 1519
11 46625808 46627917 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483861 Hean11g01526 1526
11 46696869 46701092 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0483871 Hean11g01527 1527
31 43062433 43067410 + >Htub.h1tg002121l.g204.t1 Hetu31g00972 972
31 43128361 43130073 + >Htub.h1tg002121l.g205.t1 Hetu31g00973 973
31 43350392 43357309 + >Htub.h1tg002121l.g209.t1 Hetu31g00977 977
31 45062898 45070980 + >Htub.h1tg000660l.g370.t1 Hetu31g01016 1016
31 45224543 45226035 + >Htub.h1tg000660l.g375.t1 Hetu31g01021 1021
32 49793150 49796369 + >Htub.h1tg000795l.g314.t1 Hetu32g01065 1065
32 49823650 49831726 + >Htub.h1tg000795l.g315.t1 Hetu32g01066 1066
32 49964390 49965894 + >Htub.h1tg000795l.g316.t1 Hetu32g01067 1067
33 45526932 45533058 + >Htub.h1tg001052l.g271.t1 Hetu33g01091 1091
33 45570263 45571995 + >Htub.h1tg001052l.g270.t1 Hetu33g01092 1092
33 45773878 45781693 + >Htub.h1tg001052l.g267.t1 Hetu33g01095 1095
33 45837030 45837410 - >Htub.h1tg001052l.g266.t1 Hetu33g01096 1096
33 47473268 47474884 + >Htub.h1tg001052l.g227.t1 Hetu33g01134 1134
33 47500224 47508359 + >Htub.h1tg001052l.g225.t1 Hetu33g01136 1136
33 47653157 47654660 + >Htub.h1tg001052l.g224.t1 Hetu33g01137 1137
7 145973065 145974780 + CAI9295296.1 Laca7g03096 3096
7 146127273 146132267 + CAI9295297.1 Laca7g03097 3097
7 146204015 146204407 - CAI9295299.1 Laca7g03099 3099
7 146591564 146595180 + CAI9295314.1 Laca7g03113 3113
7 146612700 146616046 + CAI9295315.1 Laca7g03114 3114
7 146654187 146655683 + CAI9295316.1 Laca7g03115 3115
7 146807352 146811317 - CAI9295317.1 Laca7g03116 3116
2 47303331 47306979 + LmiAMIRv0_Chr02g0087061 Lomi2g04173 4173
2 47314279 47315641 - LmiAMIRv0_Chr02g0087071 Lomi2g04174 4174
2 47322718 47326131 - LmiAMIRv0_Chr02g0087081 Lomi2g04175 4175
2 47331505 47333870 - LmiAMIRv0_Chr02g0087091 Lomi2g04176 4176
2 47369448 47369804 + LmiAMIRv0_Chr02g0087111 Lomi2g04178 4178
2 47374707 47380257 - LmiAMIRv0_Chr02g0087121 Lomi2g04179 4179
2 47387307 47389362 - LmiAMIRv0_Chr02g0087131 Lomi2g04180 4180
2 47393992 47396197 - LmiAMIRv0_Chr02g0087141 Lomi2g04181 4181
7 199063688 199066741 + >KAJ0197092.1 Lssa7g03789 3789
7 199069394 199070508 + >KAJ0196064.1 Lssa7g03790 3790
7 199313708 199315385 + >KAJ0197540.1 Lssa7g03791 3791
7 199665055 199670160 + >KAJ0195898.1 Lssa7g03797 3797
7 199952643 199953035 - >KAJ0198076.1 Lssa7g03798 3798
7 200441192 200443313 + >KAJ0194914.1 Lssa7g03810 3810
7 200477961 200481288 + >KAJ0197445.1 Lssa7g03811 3811
7 200599663 200601125 + >KAJ0195980.1 Lssa7g03812 3812
7 200898147 200898601 - >KAJ0198081.1 Lssa7g03814 3814
17 44203233 44211378 + KAD3067131.1 Mimi17g00809 809
17 44393209 44394523 + KAD3067133.1 Mimi17g00811 811
17 44849078 44856054 + KAD3067137.1 Mimi17g00815 815
17 45258196 45262527 + KAD3067144.1 Mimi17g00822 822
17 45427347 45429062 + KAD3067146.1 Mimi17g00824 824
4 15684101 15691785 + PdyAMIRv0_Chr04g0156691 Pdy4g00862 862
4 15733231 15735900 + PdyAMIRv0_Chr04g0156701 Pdy4g00863 863
4 15880268 15880654 - PdyAMIRv0_Chr04g0156721 Pdy4g00865 865
4 16486421 16489336 + PdyAMIRv0_Chr04g0156841 Pdy4g00877 877
4 16497642 16501033 + PdyAMIRv0_Chr04g0156851 Pdy4g00878 878
4 16548874 16552524 - PdyAMIRv0_Chr04g0156881 Pdy4g00881 881
1 149246358 149249491 + PluAMIRv0_Chr01g0205921 Pslu1g20683 20683
1 149254695 149256776 - PluAMIRv0_Chr01g0205931 Pslu1g20684 20684
1 149300197 149303500 - PluAMIRv0_Chr01g0205991 Pslu1g20690 20690
1 149305137 149307637 - PluAMIRv0_Chr01g0206001 Pslu1g20691 20691
1 149406289 149406645 + PluAMIRv0_Chr01g0206161 Pslu1g20707 20707
1 149414429 149420599 - PluAMIRv0_Chr01g0206171 Pslu1g20708 20708
1 149434900 149436512 - PluAMIRv0_Chr01g0206181 Pslu1g20709 20709
1 149459844 149462413 - PluAMIRv0_Chr01g0206211 Pslu1g20712 20712
12 1377538 1382344 + SinAMIRv0_Chr12g0356691 Sain12g00104 104
12 1384417 1387148 + SinAMIRv0_Chr12g0356701 Sain12g00105 105
12 1435836 1437210 + SinAMIRv0_Chr12g0356711 Sain12g00106 106
12 1470409 1478249 + SinAMIRv0_Chr12g0356721 Sain12g00107 107
12 1490746 1491147 - SinAMIRv0_Chr12g0356731 Sain12g00108 108
12 1615171 1619100 + SinAMIRv0_Chr12g0356771 Sain12g00112 112
12 1644556 1649300 + SinAMIRv0_Chr12g0356781 Sain12g00113 113
12 1690388 1692477 + SinAMIRv0_Chr12g0356801 Sain12g00115 115
12 1706530 1710436 - SinAMIRv0_Chr12g0356811 Sain12g00116 116
7 8359729 8365218 + KAI3810085.1 Smso7g00505 505
7 8385931 8387193 + KAI3810086.1 Smso7g00506 506
7 8426663 8431813 + KAI3810088.1 Smso7g00508 508
7 8437113 8437496 - KAI3810089.1 Smso7g00509 509
7 8651817 8657196 + KAI3810102.1 Smso7g00522 522
7 8657221 8661340 + KAI3810103.1 Smso7g00523 523
7 8670089 8671665 + KAI3810105.1 Smso7g00525 525
29 9233418 9238525 + KAI3675650.1 Smso29g00656 656
29 9280163 9281366 + KAI3675651.1 Smso29g00657 657
29 9311318 9316109 + KAI3675652.1 Smso29g00658 658
29 9331811 9332194 - KAI3675653.1 Smso29g00659 659
29 9888678 9891688 + KAI3675674.1 Smso29g00680 680
29 9895362 9899806 + KAI3675675.1 Smso29g00681 681
29 9909905 9911516 + KAI3675676.1 Smso29g00682 682
5 73269980 73273872 + transfrag23871.t01 Soca5g05330 5330
5 73282826 73284588 - transfrag23872.t01 Soca5g05331 5331
5 73294131 73299068 - transfrag23873.t01 Soca5g05332 5332
5 73312673 73316288 - transfrag23874.t01 Soca5g05333 5333
5 73538262 73538750 + transfrag23895.t01 Soca5g05351 5351
5 73549956 73556772 - transfrag23896.t01 Soca5g05352 5352
5 73586466 73588646 - transfrag23897.t01 Soca5g05353 5353
5 73678625 73683624 - transfrag23898.t01 Soca5g05354 5354
5 73740553 73748074 - transfrag23903.t01 Soca5g05355 5355
6 20845454 20849170 + Streb.6G007160.1 Stre6g00716 716
6 20885701 20887371 + Streb.6G007170.1 Stre6g00717 717
6 20993635 20996033 + Streb.6G007200.1 Stre6g00720 720
6 21152593 21153318 - Streb.6G007230.1 Stre6g00723 723
6 21295311 21299536 + Streb.6G007260.1 Stre6g00726 726
6 21315735 21317532 + Streb.6G007270.1 Stre6g00727 727
1 53465249 53468564 + >KAK1440108.1 Taer1g05933 5933
1 53506437 53509509 + >KAK1440110.1 Taer1g05935 5935
1 53538794 53539180 - >KAK1440113.1 Taer1g05938 5938
1 53574088 53577564 + >KAK1440116.1 Taer1g05941 5941
1 53581562 53584680 + >KAK1440117.1 Taer1g05942 5942
1 53592522 53595096 + >KAK1440118.1 Taer1g05943 5943
4 59507745 59510450 + TkA04G234390.1 Tako4g03066 3066
4 59511430 59512886 + TkA04G234400.1 Tako4g03067 3067
4 59681300 59683224 + TkA04G235070.1 Tako4g03071 3071
4 59855651 59860264 + TkA04G235600.3 Tako4g03074 3074
4 59868725 59869123 - TkA04G235630.1 Tako4g03075 3075
4 34819544 34822347 + TbA04G052420.1 Tamo4g02134 2134
4 34855011 34857064 + TbA04G052360.1 Tamo4g02137 2137
4 34890588 34896247 + TbA04G052330.1 Tamo4g02139 2139
4 34901117 34902193 - TbA04G052320.1 Tamo4g02140 2140
4 35912834 35915851 + TbA04G051040.1 Tamo4g02180 2180
4 35979415 35983092 + TbA04G050980.1 Tamo4g02183 2183
4 35991450 35993051 + TbA04G050960.1 Tamo4g02184 2184
       
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