AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi18g00053 Sain8g02064 . . Ccar5g01621 . . . . . . Pslu2g13989 . Lomi7g01726 . Ecan8g02654 Soca4g03373 . . . . . Chma3g03570 Chmo25g01441 Chmo26g01571 Chmo27g01217 Chla9g03728 Chna8g00994 Cind9g04280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00052 Sain8g02063 . . Ccar5g01620 . . . . . . Pslu2g13960 . Lomi7g01724 . Ecan8g02656 Soca4g03374 . . . . . Chma3g03580 Chmo25g01443 Chmo26g01573 Chmo27g01214 Chla9g03725 Chna8g00996 Cind9g04284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . Ccar5g01618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00048 Sain8g02055 . . Ccar5g01617 . . . . . . Pslu2g13955 Lomi6g01952 Lomi7g01723 Enbr1g09166 Ecan8g02658 Soca4g03376 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00046 Sain8g02049 . . Ccar5g01615 Cien7g02538 . Lssa3g03579 Laca3g02820 . . Pslu2g13947 . . . Ecan8g02659 Soca4g03377 Glco7g02094 . . . . . . . . . Chna8g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00045 Sain8g02048 . . Ccar5g01613 . . . . . . Pslu2g13934 . Lomi7g01722 Enbr1g09165 Ecan8g02660 Soca4g03378 . . . . . Chma3g03605 Chmo25g01463 Chmo26g01590 . Chla9g03714 Chna8g01006 Cind9g04297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00044 Sain8g02046 . . Ccar5g01612 Cien7g02542 Cich8g01666 Lssa3g03599 Laca3g02828 . Tamo6g02521 Pslu2g13928 . Lomi7g01721 Enbr1g09164 Ecan8g02661 Soca4g03379 Glco7g02097 Artr9g04660 Aary7g02358 Aary15g02251 Aann3g01635 Chma3g03606 Chmo25g01464 Chmo26g01591 Chmo27g01204 Chla9g03712 Chna8g01007 Cind9g04298 Pdy3g03085 Cobi3g02267 Hean15g01337 Bial14g01335 Bial5g03055 Dapi30g00590 Dapi14g00567 Hetu43g01413 Hetu45g01442 Hetu44g01342 Amtr08g04006 . . Taer5g00709 Fro11g01657 . . Fra7g01720 Fli2g01950 Stre2g01801 . . . . . . . . . . . . . . . . . . . . .
Armi18g00043 Sain8g02045 . . Ccar5g01611 Cien7g02543 Cich8g01667 Lssa3g03600 Laca3g02831 Tako6g02979 Tamo6g02531 Pslu2g13921 . . Enbr1g09163 Ecan8g02662 Soca4g03380 Glco7g02099 Artr9g04661 Aary7g02359 Aary15g02252 Aann3g01636 Chma3g03607 Chmo25g01465 Chmo26g01592 Chmo27g01427 Chla9g03711 Chna8g01008 Cind9g04299 Pdy3g03086 . Hean15g01338 . . . . . Hetu45g01443 Hetu44g01343 Amtr08g04007 . . . Fro11g01656 Fso10g02379 Ftr12g02546 Fra7g01721 Fli2g01949 Stre2g01800 . . . . . . . . . . . . . . . . . . . . .
Armi18g00042 Sain8g02044 . . . Cien7g02544 Cich8g01668 Lssa3g03601 Laca3g02832 Tako6g02980 . Pslu2g13920 . Lomi7g01720 Enbr1g09162 Ecan8g02663 Soca4g03381 Glco7g02100 Artr9g04669 Aary7g02360 Aary15g02253 Aann3g01640 Chma3g03608 Chmo25g01466 Chmo26g01593 Chmo27g01428 Chla9g03710 Chna8g01009 Cind9g04300 Pdy3g03087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . Chna8g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
3 102083344 102099913 + chr3g0636411 Aann3g01635 1635
3 102100916 102102774 + chr3g0636421 Aann3g01636 1636
3 102163408 102167810 + chr3g0636471 Aann3g01640 1640
7 202567638 202571802 + Aargg7g23580.1 Aary7g02358 2358
7 202573507 202574806 + Aargg7g23590.1 Aary7g02359 2359
7 202575339 202580738 + Aargg7g23600.1 Aary7g02360 2360
15 173841854 173846242 + Aargg15g22510.1 Aary15g02251 2251
15 173848093 173849399 + Aargg15g22520.1 Aary15g02252 2252
15 173849915 173856199 + Aargg15g22530.1 Aary15g02253 2253
8 107639060 107643396 + AtrifAMIRv0_Chr08g0555881 Amtr08g04006 4006
8 107645356 107646345 + AtrifAMIRv0_Chr08g0555891 Amtr08g04007 4007
18 600699 603141 - AmiAMIRv0_Chr18g0469751 Armi18g00042 42
18 603529 604518 - AmiAMIRv0_Chr18g0469761 Armi18g00043 43
18 606680 611527 - AmiAMIRv0_Chr18g0469771 Armi18g00044 44
18 614050 617621 + AmiAMIRv0_Chr18g0469781 Armi18g00045 45
18 620828 622384 + AmiAMIRv0_Chr18g0469791 Armi18g00046 46
18 636052 638936 - AmiAMIRv0_Chr18g0469811 Armi18g00048 48
18 674564 674989 - AmiAMIRv0_Chr18g0469851 Armi18g00052 52
18 691894 698184 - AmiAMIRv0_Chr18g0469861 Armi18g00053 53
9 184730668 184737288 + AtridAMIRv0_Chr09g1092031 Artr9g04660 4660
9 184739490 184740803 + AtridAMIRv0_Chr09g1092041 Artr9g04661 4661
9 184975716 184978934 + AtridAMIRv0_Chr09g1092121 Artr9g04669 4669
5 76688673 76692141 - g94525.t1 Bial5g03055 3055
14 24735670 24736735 - g101441.t1 Bial14g01335 1335
5 37102088 37107169 - gnl|WGS:LEKV|Ccrd_019306.mRNA.1_mrna Ccar5g01611 1611
5 37107825 37113822 - gnl|WGS:LEKV|Ccrd_019307.mRNA.1_mrna Ccar5g01612 1612
5 37116324 37120433 + gnl|WGS:LEKV|Ccrd_019308.mRNA.1_mrna Ccar5g01613 1613
5 37124686 37126218 + gnl|WGS:LEKV|Ccrd_019310.mRNA.1_mrna Ccar5g01615 1615
5 37142284 37145585 - gnl|WGS:LEKV|Ccrd_019312.mRNA.1_mrna Ccar5g01617 1617
5 37148139 37152951 + gnl|WGS:LEKV|Ccrd_019313.mRNA.1_mrna Ccar5g01618 1618
5 37158300 37158593 - gnl|WGS:LEKV|Ccrd_019315.mRNA.1_mrna Ccar5g01620 1620
5 37161337 37169350 - gnl|WGS:LEKV|Ccrd_019316.mRNA.1_mrna Ccar5g01621 1621
9 132939909 132942828 - ClaG1_Chr09g0616711 Chla9g03710 3710
9 132943439 132944848 - ClaG1_Chr09g0616721 Chla9g03711 3711
9 132951385 132955629 - ClaG1_Chr09g0616731 Chla9g03712 3712
9 133050649 133054332 + ClaG1_Chr09g0616751 Chla9g03714 3714
9 133884533 133885140 - ClaG1_Chr09g0616861 Chla9g03725 3725
9 133946596 133952243 - ClaG1_Chr09g0616891 Chla9g03728 3728
3 148171419 148175850 + CmaNakai_Chr03g0265301 Chma3g03570 3570
3 148305944 148306363 + CmaNakai_Chr03g0265401 Chma3g03580 3580
3 149550848 149554455 - CmaNakai_Chr03g0265651 Chma3g03605 3605
3 149559754 149564318 + CmaNakai_Chr03g0265661 Chma3g03606 3606
3 149569241 149570512 + CmaNakai_Chr03g0265671 Chma3g03607 3607
3 149571353 149578998 + CmaNakai_Chr03g0265681 Chma3g03608 3608
25 121328802 121334216 + evm.model.scaffold_717.32 Chmo25g01441 1441
25 121532654 121533073 + evm.model.scaffold_717.20 Chmo25g01443 1443
25 122156028 122159084 - evm.model.scaffold_6450.56 Chmo25g01463 1463
25 122253931 122258365 + evm.model.scaffold_6450.52 Chmo25g01464 1464
25 122261485 122262946 + evm.model.scaffold_6450.51 Chmo25g01465 1465
25 122263287 122267160 + evm.model.scaffold_6450.50 Chmo25g01466 1466
26 132519092 132524512 + evm.model.scaffold_11656.13 Chmo26g01571 1571
26 132547938 132548117 + evm.model.scaffold_11656.16 Chmo26g01573 1573
26 133156592 133160611 - evm.model.scaffold_11656.53 Chmo26g01590 1590
26 133214522 133219080 + evm.model.scaffold_11656.54 Chmo26g01591 1591
26 133249687 133251186 + evm.model.scaffold_11656.59 Chmo26g01592 1592
26 133252172 133255193 + evm.model.scaffold_11656.60 Chmo26g01593 1593
27 98734825 98785752 - evm.model.scaffold_893.4 Chmo27g01204 1204
27 99733073 99733747 - evm.model.scaffold_1561.133 Chmo27g01214 1214
27 99783374 99788861 - evm.model.scaffold_1561.128 Chmo27g01217 1217
27 110993992 110994910 + evm.model.scaffold_1622.359 Chmo27g01427 1427
27 110995808 110999838 + evm.model.scaffold_1622.360 Chmo27g01428 1428
8 97568717 97573249 + Cn0527080 Chna8g00994 994
8 97689685 97696680 + Cn0527050 Chna8g00996 996
8 98797671 98799188 - Cn0735920 Chna8g01005 1005
8 98861555 98863808 - Cn0735910 Chna8g01006 1006
8 98935281 98939534 + Cn0735900 Chna8g01007 1007
8 98941402 98942760 + Cn0735890 Chna8g01008 1008
8 98943199 98946565 + Cn0735880 Chna8g01009 1009
8 98964371 98966102 + Cn0735870 Chna8g01010 1010
8 55306082 55308900 + KAI3699912.1 Cich8g01666 1666
8 55323020 55324009 + KAI3699913.1 Cich8g01667 1667
8 55324345 55326675 + KAI3699914.1 Cich8g01668 1668
7 38727210 38728772 + KAI3503563.1 Cien7g02538 2538
7 38801886 38804153 + KAI3503567.1 Cien7g02542 2542
7 38838589 38839578 + KAI3503568.1 Cien7g02543 2543
7 38839938 38843285 + KAI3503569.1 Cien7g02544 2544
9 149224638 149229147 + D.indicum_Contig82_G00113.t1 Cind9g04280 4280
9 149443462 149443881 + D.indicum_Contig82_G00117.t1 Cind9g04284 4284
9 150454307 150457537 - D.indicum_Contig82_G00130.t1 Cind9g04297 4297
9 150550863 150555365 + D.indicum_Contig82_G00131.t1 Cind9g04298 4298
9 150557894 150559178 + D.indicum_Contig82_G00132.t1 Cind9g04299 4299
9 150559892 150562820 + D.indicum_Contig82_G00133.t1 Cind9g04300 4300
3 70556403 70559017 + h2tg000002l_1.g22304.t1 Cobi3g02267 2267
14 10184175 10187577 - h2tg000265l.g78827.t1 Dapi14g00567 567
30 10037200 10040673 - h1tg000008l.g131300.t1 Dapi30g00590 590
8 37505656 37511917 + XM_043751412.1 Ecan8g02654 2654
8 37521913 37522616 + XM_043752472.1 Ecan8g02656 2656
8 37532872 37535563 + XM_043751970.1 Ecan8g02658 2658
8 37544181 37545772 - XM_043752727.1 Ecan8g02659 2659
8 37546701 37550803 - XM_043750471.1 Ecan8g02660 2660
8 37554428 37560502 + XM_043752898.1 Ecan8g02661 2661
8 37561398 37562871 + XM_043752388.1 Ecan8g02662 2662
8 37562972 37566339 + XM_043751185.1 Ecan8g02663 2663
1 284794967 284798156 - evm.model.ctg4797.7 Enbr1g09162 9162
1 284799468 284802055 - evm.model.ctg4797.6 Enbr1g09163 9163
1 284809478 284824813 - evm.model.ctg4797.4 Enbr1g09164 9164
1 284828255 284831677 + evm.model.ctg4797.3 Enbr1g09165 9165
1 284862223 284867494 + evm.model.ctg10477.1 Enbr1g09166 9166
2 35679409 35680398 - FliAMIRv0_Chr02g0053731 Fli2g01949 1949
2 35684976 35689810 - FliAMIRv0_Chr02g0053741 Fli2g01950 1950
7 74568262 74572175 + FraAMIRv0_Chr07g0115841 Fra7g01720 1720
7 74574227 74575216 + FraAMIRv0_Chr07g0115851 Fra7g01721 1721
11 14988365 14989354 - FroAMIRv0_Chr11g0177001 Fro11g01656 1656
11 14991336 14995255 - FroAMIRv0_Chr11g0177011 Fro11g01657 1657
10 65799084 65800073 + FsoAMIRv0_Chr10g0240951 Fso10g02379 2379
12 88904153 88905142 + FtrAMIRv0_Chr12g0356561 Ftr12g02546 2546
7 344071825 344073345 - GcoAMIRv0_Chr07g0468791 Glco7g02094 2094
7 344152112 344158493 + GcoAMIRv0_Chr07g0468821 Glco7g02097 2097
7 344470306 344471852 + GcoAMIRv0_Chr07g0468841 Glco7g02099 2099
7 344472369 344476184 + GcoAMIRv0_Chr07g0468851 Glco7g02100 2100
15 32775552 32782766 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0686201 Hean15g01337 1337
15 32787051 32788173 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0686211 Hean15g01338 1338
43 98249534 98256134 + >Htub.h1tg003716l.g224.t1 Hetu43g01413 1413
44 85142487 85148172 + >Htub.h1tg001734l.g454.t1 Hetu44g01342 1342
44 85260654 85261643 + >Htub.h1tg001734l.g453.t1 Hetu44g01343 1343
45 94434061 94441980 + >Htub.h1tg003389l.g212.t1 Hetu45g01442 1442
45 94591673 94592662 + >Htub.h1tg003389l.g213.t1 Hetu45g01443 1443
3 118273474 118275072 + CAI9277182.1 Laca3g02820 2820
3 118806606 118809872 + CAI9277190.1 Laca3g02828 2828
3 118906086 118907075 + CAI9277193.1 Laca3g02831 2831
3 118907274 118910437 + CAI9277194.1 Laca3g02832 2832
6 27513372 27515527 + LmiAMIRv0_Chr06g0205901 Lomi6g01952 1952
7 27716977 27719167 - LmiAMIRv0_Chr07g0231901 Lomi7g01720 1720
7 27732818 27736111 - LmiAMIRv0_Chr07g0231911 Lomi7g01721 1721
7 27747984 27751478 + LmiAMIRv0_Chr07g0231921 Lomi7g01722 1722
7 27766278 27768374 - LmiAMIRv0_Chr07g0231931 Lomi7g01723 1723
7 27783377 27783802 - LmiAMIRv0_Chr07g0231941 Lomi7g01724 1724
7 27809888 27810175 - LmiAMIRv0_Chr07g0231961 Lomi7g01726 1726
3 207656875 207658555 + >KAJ0215620.1 Lssa3g03579 3579
3 208933019 208934966 + >KAJ0217030.1 Lssa3g03599 3599
3 209020935 209021924 + >KAJ0218822.1 Lssa3g03600 3600
3 209022224 209025185 + >KAJ0218455.1 Lssa3g03601 3601
3 88524339 88529042 + PdyAMIRv0_Chr03g0129241 Pdy3g03085 3085
3 88538901 88539890 + PdyAMIRv0_Chr03g0129251 Pdy3g03086 3086
3 88540280 88547369 + PdyAMIRv0_Chr03g0129261 Pdy3g03087 3087
2 103677322 103680674 - PluAMIRv0_Chr02g0359651 Pslu2g13920 13920
2 103680981 103681505 - PluAMIRv0_Chr02g0359661 Pslu2g13921 13921
2 103710645 103715072 - PluAMIRv0_Chr02g0359731 Pslu2g13928 13928
2 103742968 103746038 + PluAMIRv0_Chr02g0359791 Pslu2g13934 13934
2 103787273 103787731 + PluAMIRv0_Chr02g0359921 Pslu2g13947 13947
2 103843163 103846297 - PluAMIRv0_Chr02g0360001 Pslu2g13955 13955
2 103873189 103873614 - PluAMIRv0_Chr02g0360051 Pslu2g13960 13960
2 104095676 104100923 - PluAMIRv0_Chr02g0360341 Pslu2g13989 13989
8 136244305 136247342 - SinAMIRv0_Chr08g0197771 Sain8g02044 2044
8 136247713 136248702 - SinAMIRv0_Chr08g0197781 Sain8g02045 2045
8 136340826 136348881 - SinAMIRv0_Chr08g0197791 Sain8g02046 2046
8 136436120 136451933 + SinAMIRv0_Chr08g0197811 Sain8g02048 2048
8 136456227 136457765 + SinAMIRv0_Chr08g0197821 Sain8g02049 2049
8 136817099 136819587 - SinAMIRv0_Chr08g0197881 Sain8g02055 2055
8 137084566 137084991 - SinAMIRv0_Chr08g0197961 Sain8g02063 2063
8 137091991 137098580 - SinAMIRv0_Chr08g0197971 Sain8g02064 2064
4 64107513 64113536 + transfrag37622.t01 Soca4g03373 3373
4 64129867 64130506 + transfrag37621.t01 Soca4g03374 3374
4 64151661 64155055 + transfrag37619.t01 Soca4g03376 3376
4 64166776 64168460 - transfrag37618.t01 Soca4g03377 3377
4 64189746 64195284 - transfrag37617.t01 Soca4g03378 3378
4 64202969 64207951 + transfrag37616.t01 Soca4g03379 3379
4 64214725 64216253 + asmbl_6620.p1 Soca4g03380 3380
4 64216442 64220372 + transfrag37614.t01 Soca4g03381 3381
2 55106378 55107637 - Streb.2G018000.1 Stre2g01800 1800
2 55269950 55273352 - Streb.2G018010.1 Stre2g01801 1801
5 6087372 6091587 - >KAK1423238.1 Taer5g00709 709
6 55157908 55158897 + TkA06G212940.1 Tako6g02979 2979
6 55159159 55160507 + TkA06G212950.1 Tako6g02980 2980
6 40398525 40400304 + TbA06G060370.1 Tamo6g02521 2521
6 40492169 40494979 + TbA06G060200.1 Tamo6g02531 2531
       
DecoBrowse