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Asteraceae Genomic Research Platform

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Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g01022 . . Cati3g01040 Ccar2g01775 Cien5g03009 Cich4g04037 Lssa7g03004 Laca7g02441 Tako4g04583 Tamo4g03349 Pslu1g21853 Lomi1g00082 Lomi2g04580 . Ecan3g01833 Soca5g03058 Glco3g00492 Artr3g12700 . Aary13g03571 Aann4g01651 . . . . . . . Pdy4g00112 . Hean4g04542 . . . Dapi23g00079 . . . . . . . . . . . . Stre6g00117 . Cobi4g03362 Hean16g01384 Bial4g03676 Bial16g03022 Dapi7g00065 Dapi23g00083 . . . Amtr01g04400 Smso7g00252 . . . . . . . Stre6g00118 .
Armi1g01027 Sain12g00822 . Cati3g01041 Ccar2g01774 Cien5g03008 Cich4g04036 Lssa7g03001 Laca7g02438 Tako4g04585 Tamo4g03353 Pslu1g21863 Lomi1g00081 Lomi2g04581 . Ecan3g01831 . Glco3g00505 Artr3g12704 . . Aann4g01654 . . . . . . . Pdy4g00111 . Hean4g04544 . . . Dapi23g00077 . . . Amtr06g04411 . . Taer1g05740 Fro12g02578 . Ftr4g03860 Fra11g02736 Fli1g00094 Stre6g00115 Mimi9g01600 . Hean16g01378 Bial4g03677 Bial16g03024 Dapi7g00064 Dapi23g00081 . . . Amtr01g04401 . . . . . . . . Stre6g00117 Mimi17g00118
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g01033 Sain12g00823 . . Ccar2g01773 . Cich4g04029 Lssa7g02995 Laca7g02432 Tako4g04590 Tamo4g03356 Pslu1g21870 Lomi1g00079 Lomi2g04582 . Ecan3g01829 Soca5g03059 . . . . . . . . . . . . Pdy4g00110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g01036 Sain12g00825 Ceso2g01683 Cati3g01049 Ccar2g01772 . Cich4g04025 Lssa7g02993 Laca7g02430 . Tamo4g03358 Pslu1g21871 Lomi1g00078 Lomi2g04583 . Ecan3g01828 Soca5g03060 . . . Aary13g03561 Aann4g01677 Chma7g09226 Chmo13g00194 Chmo14g00263 Chmo15g00223 Chla6g06831 Chna2g00103 Cind3g04351 Pdy4g00108 . Hean4g04547 . . Dapi16g02082 Dapi23g00072 Hetu11g00059 Hetu12g00058 Hetu10g00089 . . Smso26g02087 . Fro12g02583 Fso2g00061 . Fra11g02731 Fli1g00089 Stre6g00110 . Cobi4g03368 Hean16g01367 Bial4g03684 Bial16g03032 Dapi7g00060 Dapi23g00072 Hetu48g00978 Hetu46g01099 Hetu47g01061 Amtr01g04415 Smso7g00256 Smso29g00297 . Fro12g02583 Fso2g00061 . Fra11g02731 Fli1g00089 Stre6g00110 Mimi17g00115
. Sain12g00826 . Cati3g01050 Ccar2g01771 . Cich4g04022 Lssa7g02992 Laca7g02429 Tako4g04610 . Pslu1g21874 Lomi1g00077 Lomi2g04586 . Ecan3g01822 Soca5g03066 . Artr3g12752 . Aary13g03610 Aann4g01679 Chma7g09233 Chmo13g00191 Chmo14g00261 . Chla6g06833 Chna2g00100 Cind3g04353 Pdy4g00107 . Hean4g04548 . . . Dapi23g00071 Hetu11g00057 Hetu12g00057 Hetu10g00088 Amtr06g04418 . . Taer1g05745 Fro12g02585 Fso2g00057 Ftr4g03865 Fra11g02730 Fli1g00084 Stre6g00109 Mimi9g01605 . Hean16g01365 . . Dapi7g00059 Dapi23g00071 Hetu48g00977 Hetu46g01100 Hetu47g01062 Amtr01g04416 . Smso29g00298 . . . . . . Stre6g00109 .
Armi1g01037 Sain12g00829 Ceso2g01684 Cati3g01051 Ccar2g01770 . Cich4g04020 Lssa7g02991 Laca7g02427 . Tamo4g03359 Pslu1g21876 Lomi1g00076 Lomi2g04587 Enbr6g01847 Ecan3g01820 Soca5g03068 . Artr3g12831 . Aary13g03614 Aann4g01683 Chma7g09262 Chmo13g00183 Chmo14g00255 Chmo15g00214 Chla6g06838 Chna2g00096 Cind3g04360 Pdy4g00106 . Hean4g04550 . . Dapi16g02083 Dapi23g00067 Hetu11g00055 Hetu12g00056 Hetu10g00087 Amtr06g04421 . Smso26g02089 . . . . . . . Mimi9g01607 Cobi4g03369 Hean16g01364 Bial4g03685 . Dapi7g00058 Dapi23g00067 Hetu48g00976 Hetu46g01103 Hetu47g01064 Amtr01g04420 Smso7g00258 Smso29g00299 Taer1g05745 Fro12g02585 Fso2g00057 Ftr4g03865 Fra11g02730 Fli1g00084 Stre6g00107 Mimi17g00114
Armi1g01038 Sain12g00830 Ceso2g01685 Cati3g01052 Ccar2g01769 Cien5g03000 Cich4g04019 Lssa7g02990 Laca7g02426 Tako4g04623 . Pslu1g21881 Lomi1g00074 Lomi2g04588 Enbr6g01850 Ecan3g01818 Soca5g03070 . Artr3g12850 . Aary13g03616 Aann4g01692 Chma7g09274 Chmo13g00172 Chmo14g00249 Chmo15g00207 Chla6g06879 Chna2g00080 Cind3g03261 Pdy4g00102 . . . . . . . . . . . . . . . . . . . . Cobi4g03370 Hean16g01363 Bial4g03686 . Dapi7g00057 Dapi23g00066 Hetu48g00975 Hetu46g01104 Hetu47g01065 Amtr01g04424 Smso7g00260 Smso29g00301 Taer1g05746 Fro12g02586 Fso2g00056 Ftr4g03867 Fra11g02728 Fli1g00083 Stre6g00106 Mimi17g00113
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
First Page 74 of 3145 Last
Gene_GFF
Chromosome Start End Strand Old_gene Gene Num
4 77291812 77294707 + chr4g0791071 Aann4g01651 1651
4 77340899 77342122 + chr4g0791131 Aann4g01654 1654
4 77688446 77693668 + chr4g0791561 Aann4g01677 1677
4 77704413 77705395 - chr4g0791591 Aann4g01679 1679
4 77783829 77791511 + chr4g0791681 Aann4g01683 1683
4 77963294 77969888 - chr4g0791821 Aann4g01692 1692
13 213871412 213876173 - Aargg13g35610.1 Aary13g03561 3561
13 214647479 214648474 - Aargg13g35710.1 Aary13g03571 3571
13 217412298 217418811 - Aargg13g36100.1 Aary13g03610 3610
13 217530520 217537245 + Aargg13g36140.1 Aary13g03614 3614
13 217818815 217825223 - Aargg13g36160.1 Aary13g03616 3616
1 118434709 118435689 + AtrifAMIRv0_Chr01g0044001 Amtr01g04400 4400
1 118444614 118445600 + AtrifAMIRv0_Chr01g0044011 Amtr01g04401 4401
1 118840848 118843972 + AtrifAMIRv0_Chr01g0044151 Amtr01g04415 4415
1 118844544 118846776 - AtrifAMIRv0_Chr01g0044161 Amtr01g04416 4416
1 118930889 118936026 + AtrifAMIRv0_Chr01g0044201 Amtr01g04420 4420
1 118956997 118965096 - AtrifAMIRv0_Chr01g0044241 Amtr01g04424 4424
6 97741632 97742606 + AtrifAMIRv0_Chr06g0432361 Amtr06g04411 4411
6 97866487 97870896 + AtrifAMIRv0_Chr06g0432431 Amtr06g04418 4418
6 97879421 97879837 + AtrifAMIRv0_Chr06g0432461 Amtr06g04421 4421
1 27979231 27980130 + AmiAMIRv0_Chr01g0010221 Armi1g01022 1022
1 28044455 28045450 + AmiAMIRv0_Chr01g0010271 Armi1g01027 1027
1 28319134 28320195 + AmiAMIRv0_Chr01g0010331 Armi1g01033 1033
1 28430193 28436310 + AmiAMIRv0_Chr01g0010361 Armi1g01036 1036
1 28500647 28504854 + AmiAMIRv0_Chr01g0010371 Armi1g01037 1037
1 28513942 28519251 - AmiAMIRv0_Chr01g0010381 Armi1g01038 1038
3 437488392 437489375 + AtridAMIRv0_Chr03g0434361 Artr3g12700 12700
3 437645841 437646836 + AtridAMIRv0_Chr03g0434401 Artr3g12704 12704
3 439374098 439374508 + AtridAMIRv0_Chr03g0434881 Artr3g12752 12752
3 441942317 441949548 + AtridAMIRv0_Chr03g0435671 Artr3g12831 12831
3 442831285 442837641 - AtridAMIRv0_Chr03g0435861 Artr3g12850 12850
4 82554329 82555291 + g62246.t1 Bial4g03676 3676
4 82558869 82559846 + g62245.t1 Bial4g03677 3677
4 82623874 82628859 + g62238.t1 Bial4g03684 3684
4 82665402 82671895 + g62237.t1 Bial4g03685 3685
4 82674376 82680600 - g62236.t1 Bial4g03686 3686
16 75427913 75428890 + g59505.t1 Bial16g03022 3022
16 75433345 75433839 - g59503.t1 Bial16g03024 3024
16 75528274 75531845 + g59495.t1 Bial16g03032 3032
3 14815781 14818962 + CtAH03T0074900.1 Cati3g01040 1040
3 14865928 14868127 + CtAH03T0075000.1 Cati3g01041 1041
3 15050095 15064972 + CtAH03T0075700.1 Cati3g01049 1049
3 15050095 15064972 + CtAH03T0075700.2 Cati3g01050 1050
3 15097578 15103875 + CtAH03T0075800.1 Cati3g01051 1051
3 15099606 15110371 - CtAH03T0075900.1 Cati3g01052 1052
2 63606608 63613637 + gnl|WGS:LEKV|Ccrd_010814.mRNA.1_mrna Ccar2g01769 1769
2 63613825 63619015 - gnl|WGS:LEKV|Ccrd_010815.mRNA.1_mrna Ccar2g01770 1770
2 63631399 63633710 - gnl|WGS:LEKV|Ccrd_010816.mRNA.1_mrna Ccar2g01771 1771
2 63634535 63640030 - gnl|WGS:LEKV|Ccrd_010817.mRNA.1_mrna Ccar2g01772 1772
2 63661816 63663166 - gnl|WGS:LEKV|Ccrd_010818.mRNA.1_mrna Ccar2g01773 1773
2 63687881 63701008 - gnl|WGS:LEKV|Ccrd_010819.mRNA.1_mrna Ccar2g01774 1774
2 63712366 63714525 - gnl|WGS:LEKV|Ccrd_010820.mRNA.1_mrna Ccar2g01775 1775
2 36556198 36561237 + >KAJ9560967.1 Ceso2g01683 1683
2 36578529 36584106 + >KAJ9560966.1 Ceso2g01684 1684
2 36585108 36590117 - >KAJ9561030.1 Ceso2g01685 1685
6 278390185 278395994 + ClaG1_Chr06g0440781 Chla6g06831 6831
6 278421692 278426376 + ClaG1_Chr06g0440801 Chla6g06833 6833
6 278754697 278756452 + ClaG1_Chr06g0440851 Chla6g06838 6838
6 280769794 280776147 - ClaG1_Chr06g0441261 Chla6g06879 6879
7 308793128 308797925 + CmaNakai_Chr07g0715281 Chma7g09226 9226
7 308907856 308910822 + CmaNakai_Chr07g0715351 Chma7g09233 9233
7 309477765 309482468 - CmaNakai_Chr07g0715641 Chma7g09262 9262
7 309808022 309821543 - CmaNakai_Chr07g0715761 Chma7g09274 9274
13 6512721 6589137 + evm.model.scaffold_113.73 Chmo13g00172 172
13 7172551 7186178 - evm.model.scaffold_113.54 Chmo13g00183 183
13 7738027 7742112 - evm.model.scaffold_113.31 Chmo13g00191 191
13 7761597 7768786 - evm.model.scaffold_113.27 Chmo13g00194 194
14 10402219 10413439 + evm.model.scaffold_11969.53 Chmo14g00249 249
14 10592395 10595521 - evm.model.scaffold_11969.42 Chmo14g00255 255
14 10822356 10827014 - evm.model.scaffold_11969.26 Chmo14g00261 261
14 10872636 10876639 - evm.model.scaffold_11969.23 Chmo14g00263 263
15 11421867 11429525 + evm.model.scaffold_212.161 Chmo15g00207 207
15 11905021 11907853 - evm.model.scaffold_212.181 Chmo15g00214 214
15 12350971 12355334 - evm.model.scaffold_212.211 Chmo15g00223 223
2 3207090 3214704 + Cn0411850 Chna2g00080 80
2 5049245 5062278 - Cn0411340 Chna2g00096 96
2 5319245 5324541 - Cn0411300 Chna2g00100 100
2 5357222 5362216 - Cn0411270 Chna2g00103 103
4 118287777 118293904 + KAI3753154.1 Cich4g04019 4019
4 118327765 118331476 - KAI3753155.1 Cich4g04020 4020
4 118387788 118389765 - KAI3753157.1 Cich4g04022 4022
4 118406044 118408980 - KAI3753160.1 Cich4g04025 4025
4 118606442 118608460 - KAI3753164.1 Cich4g04029 4029
4 118739597 118742433 - KAI3753171.1 Cich4g04036 4036
4 118742483 118742926 - KAI3753172.1 Cich4g04037 4037
5 71776362 71782463 + KAI3509520.1 Cien5g03000 3000
5 72029360 72030310 - KAI3509528.1 Cien5g03008 3008
5 72040128 72041156 - KAI3509529.1 Cien5g03009 3009
3 371991052 372084022 - D.indicum_Contig308_G00072.t1 Cind3g03261 3261
3 370279894 370284809 + D.indicum_Contig50_G00167.t1 Cind3g04351 4351
3 370330385 370334975 + D.indicum_Contig50_G00169.t1 Cind3g04353 4353
3 370662584 370667498 + D.indicum_Contig50_G00176.t1 Cind3g04360 4360
4 83918812 83919774 + h2tg000064l_1.g27577.t1 Cobi4g03362 3362
4 83969085 83973229 + h2tg000064l_1.g27583.t1 Cobi4g03368 3368
4 84001276 84008170 + h2tg000064l_1.g27584.t1 Cobi4g03369 3369
4 84010255 84017870 - h2tg000064l_1.g27585.t1 Cobi4g03370 3370
7 1189611 1192816 + h1tg000136l.g124607.t1 Dapi7g00057 57
7 1194100 1198176 - h1tg000136l.g124606.t1 Dapi7g00058 58
7 1219229 1221907 + h1tg000136l.g124605.t1 Dapi7g00059 59
7 1223009 1226084 - h1tg000136l.g124604.t1 Dapi7g00060 60
7 1267320 1268333 + h1tg000136l.g124600.t1 Dapi7g00064 64
7 1291328 1292327 - h1tg000136l.g124599.t1 Dapi7g00065 65
16 82518316 82520423 + h1tg000026l.g57035.t1 Dapi16g02082 2082
16 82664736 82669111 + h1tg000026l.g57036.t1 Dapi16g02083 2083
23 1700350 1703498 + h2tg000064l.g12404.t1 Dapi23g00066 66
23 1714729 1719217 - h2tg000064l.g12405.t1 Dapi23g00067 67
23 1760719 1765105 + h2tg000064l.g12409.t1 Dapi23g00071 71
23 1766183 1769442 - h2tg000064l.g12410.t1 Dapi23g00072 72
23 1843636 1844097 - h2tg000064l.g12415.t1 Dapi23g00077 77
23 1853317 1853751 - h2tg000064l.g12417.t1 Dapi23g00079 79
23 1879230 1879688 - h2tg000064l.g12419.t1 Dapi23g00081 81
23 1908533 1908994 - h2tg000064l.g12421.t1 Dapi23g00083 83
3 29308826 29315389 + XM_043765258.1 Ecan3g01818 1818
3 29315816 29321596 - XM_043764650.1 Ecan3g01820 1820
3 29315816 29321595 - XM_043764647.1 Ecan3g01822 1822
3 29336367 29340251 - XM_043763606.1 Ecan3g01828 1828
3 29350037 29352052 - XM_043765832.1 Ecan3g01829 1829
3 29384112 29385260 - XM_043765259.1 Ecan3g01831 1831
3 29394022 29395207 - XM_043764854.1 Ecan3g01833 1833
6 65326574 65328560 + evm.model.ctg2241.3 Enbr6g01847 1847
6 65391563 65397142 - evm.model.ctg2241.6 Enbr6g01850 1850
1 1230255 1240110 + FliAMIRv0_Chr01g0000811 Fli1g00083 83
1 1241877 1246804 - FliAMIRv0_Chr01g0000821 Fli1g00084 84
1 1353879 1357331 - FliAMIRv0_Chr01g0000871 Fli1g00089 89
1 1478658 1479638 - FliAMIRv0_Chr01g0000921 Fli1g00094 94
11 80797226 80805452 + FraAMIRv0_Chr11g0227501 Fra11g02728 2728
11 80822919 80825852 + FraAMIRv0_Chr11g0227521 Fra11g02730 2730
11 80826745 80830203 - FraAMIRv0_Chr11g0227531 Fra11g02731 2731
11 80870241 80871221 - FraAMIRv0_Chr11g0227581 Fra11g02736 2736
12 33637943 33638923 + FroAMIRv0_Chr12g0221261 Fro12g02578 2578
12 33679694 33683226 + FroAMIRv0_Chr12g0221311 Fro12g02583 2583
12 33699275 33703913 + FroAMIRv0_Chr12g0221331 Fro12g02585 2585
12 33705311 33713728 - FroAMIRv0_Chr12g0221341 Fro12g02586 2586
2 668533 676895 + FsoAMIRv0_Chr02g0028751 Fso2g00056 56
2 678012 682906 - FsoAMIRv0_Chr02g0028761 Fso2g00057 57
2 714676 718168 - FsoAMIRv0_Chr02g0028801 Fso2g00061 61
4 122576516 122577496 + FtrAMIRv0_Chr04g0132941 Ftr4g03860 3860
4 122639426 122644013 + FtrAMIRv0_Chr04g0132991 Ftr4g03865 3865
4 122649011 122653614 - FtrAMIRv0_Chr04g0133011 Ftr4g03867 3867
3 27646379 27647374 + GcoAMIRv0_Chr03g0161211 Glco3g00492 492
3 27957571 27958554 + GcoAMIRv0_Chr03g0161341 Glco3g00505 505
4 207048799 207049836 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0191921 Hean4g04542 4542
4 207052901 207053941 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0191941 Hean4g04544 4544
4 207084136 207090874 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0191971 Hean4g04547 4547
4 207096512 207098688 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0191981 Hean4g04548 4548
4 207113774 207118635 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr04g0192001 Hean4g04550 4550
16 52938709 52946603 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0738711 Hean16g01363 1363
16 52949701 52955669 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0738721 Hean16g01364 1364
16 53053581 53055833 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0738731 Hean16g01365 1365
16 53058079 53063112 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0738751 Hean16g01367 1367
16 53500954 53501847 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0738931 Hean16g01378 1378
16 53534773 53535757 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0738991 Hean16g01384 1384
10 3217081 3220577 - >Htub.h1tg003335l.g280.t1 Hetu10g00087 87
10 3222079 3226587 - >Htub.h1tg003335l.g281.t1 Hetu10g00088 88
10 3230133 3247544 - >Htub.h1tg003335l.g282.t1 Hetu10g00089 89
11 2452229 2454828 - >Htub.h1tg000030l.g107.t1 Hetu11g00055 55
11 2479263 2484464 - >Htub.h1tg000030l.g109.t1 Hetu11g00057 57
11 2510186 2515489 - >Htub.h1tg000030l.g111.t1 Hetu11g00059 59
12 2744505 2746775 - >Htub.h1tg000754l.g259.t1 Hetu12g00056 56
12 2779646 2792409 - >Htub.h1tg000754l.g260.t1 Hetu12g00057 57
12 2795276 2800916 - >Htub.h1tg000754l.g261.t1 Hetu12g00058 58
46 56101335 56105558 + >Htub.h1tg000086l.g305.t1 Hetu46g01099 1099
46 56106495 56108903 - >Htub.h1tg000086l.g304.t1 Hetu46g01100 1100
46 56290152 56295785 + >Htub.h1tg000086l.g301.t1 Hetu46g01103 1103
46 56308366 56316542 - >Htub.h1tg000086l.g300.t1 Hetu46g01104 1104
47 60502899 60507124 + >Htub.h1tg000672l.g40.t1 Hetu47g01061 1061
47 60508023 60510070 - >Htub.h1tg000672l.g41.t1 Hetu47g01062 1062
47 60674618 60680184 + >Htub.h1tg000672l.g43.t1 Hetu47g01064 1064
47 60686062 60694496 - >Htub.h1tg000672l.g44.t1 Hetu47g01065 1065
48 53018593 53027029 + >Htub.h1tg001458l.g118.t1 Hetu48g00975 975
48 53032907 53038429 - >Htub.h1tg001458l.g119.t1 Hetu48g00976 976
48 53198696 53200745 + >Htub.h1tg001458l.g120.t1 Hetu48g00977 977
48 53201657 53205882 - >Htub.h1tg001458l.g121.t1 Hetu48g00978 978
7 115509334 115513829 + CAI9294599.1 Laca7g02426 2426
7 115516204 115519791 - CAI9294600.1 Laca7g02427 2427
7 115587573 115590380 - CAI9294603.1 Laca7g02429 2429
7 115592931 115596252 - CAI9294604.1 Laca7g02430 2430
7 115697809 115700087 - CAI9294606.1 Laca7g02432 2432
7 115843771 115844709 - CAI9294612.1 Laca7g02438 2438
7 115864866 115865861 - CAI9294615.1 Laca7g02441 2441
1 733178 738262 + LmiAMIRv0_Chr01g0000741 Lomi1g00074 74
1 761130 764143 - LmiAMIRv0_Chr01g0000761 Lomi1g00076 76
1 766506 768676 - LmiAMIRv0_Chr01g0000771 Lomi1g00077 77
1 771766 775348 - LmiAMIRv0_Chr01g0000781 Lomi1g00078 78
1 783930 784942 - LmiAMIRv0_Chr01g0000791 Lomi1g00079 79
1 793923 794924 - LmiAMIRv0_Chr01g0000811 Lomi1g00081 81
1 802471 803454 - LmiAMIRv0_Chr01g0000821 Lomi1g00082 82
2 50755437 50756426 + LmiAMIRv0_Chr02g0091131 Lomi2g04580 4580
2 50758261 50759196 + LmiAMIRv0_Chr02g0091141 Lomi2g04581 4581
2 50764831 50765898 + LmiAMIRv0_Chr02g0091151 Lomi2g04582 4582
2 50772708 50776308 + LmiAMIRv0_Chr02g0091161 Lomi2g04583 4583
2 50788406 50789943 + LmiAMIRv0_Chr02g0091191 Lomi2g04586 4586
2 50801051 50805495 + LmiAMIRv0_Chr02g0091201 Lomi2g04587 4587
2 50816392 50821710 - LmiAMIRv0_Chr02g0091211 Lomi2g04588 4588
7 158235072 158240485 + >KAJ0196606.1 Lssa7g02990 2990
7 158242457 158245815 - >KAJ0196906.1 Lssa7g02991 2991
7 158316848 158318662 - >KAJ0197768.1 Lssa7g02992 2992
7 158322497 158325149 - >KAJ0197291.1 Lssa7g02993 2993
7 158493649 158494650 - >KAJ0196263.1 Lssa7g02995 2995
7 158562660 158563598 - >KAJ0197430.1 Lssa7g03001 3001
7 158610446 158611441 - >KAJ0195619.1 Lssa7g03004 3004
9 60369484 60370431 + KAD5318335.1 Mimi9g01600 1600
9 60576641 60582269 + KAD5318340.1 Mimi9g01605 1605
9 60668781 60673028 + KAD5318342.1 Mimi9g01607 1607
17 3245601 3263049 + KAD3066435.1 Mimi17g00113 113
17 3264560 3270214 - KAD3066436.1 Mimi17g00114 114
17 3299226 3304854 - KAD3066437.1 Mimi17g00115 115
17 3366904 3367905 - KAD3066440.1 Mimi17g00118 118
4 1864464 1870120 + PdyAMIRv0_Chr04g0149101 Pdy4g00102 102
4 1892280 1894356 - PdyAMIRv0_Chr04g0149141 Pdy4g00106 106
4 1896330 1898238 - PdyAMIRv0_Chr04g0149151 Pdy4g00107 107
4 1899211 1902597 - PdyAMIRv0_Chr04g0149161 Pdy4g00108 108
4 1933357 1934301 - PdyAMIRv0_Chr04g0149181 Pdy4g00110 110
4 1957870 1958823 - PdyAMIRv0_Chr04g0149191 Pdy4g00111 111
4 1985797 1986898 + PdyAMIRv0_Chr04g0149201 Pdy4g00112 112
1 156905468 156906457 + PluAMIRv0_Chr01g0217571 Pslu1g21853 21853
1 156953280 156954254 + PluAMIRv0_Chr01g0217671 Pslu1g21863 21863
1 156991020 156992029 + PluAMIRv0_Chr01g0217741 Pslu1g21870 21870
1 157012734 157016720 + PluAMIRv0_Chr01g0217751 Pslu1g21871 21871
1 157032745 157034381 + PluAMIRv0_Chr01g0217781 Pslu1g21874 21874
1 157040959 157046000 + PluAMIRv0_Chr01g0217801 Pslu1g21876 21876
1 157080008 157081372 - PluAMIRv0_Chr01g0217851 Pslu1g21881 21881
12 20848388 20849383 + SinAMIRv0_Chr12g0363861 Sain12g00822 822
12 20923605 20924673 + SinAMIRv0_Chr12g0363871 Sain12g00823 823
12 21134669 21138496 + SinAMIRv0_Chr12g0363891 Sain12g00825 825
12 21269212 21271907 + SinAMIRv0_Chr12g0363901 Sain12g00826 826
12 21326534 21331397 + SinAMIRv0_Chr12g0363931 Sain12g00829 829
12 21333103 21337922 - SinAMIRv0_Chr12g0363941 Sain12g00830 830
7 4471270 4472241 + KAI3809832.1 Smso7g00252 252
7 4523661 4526751 + KAI3809836.1 Smso7g00256 256
7 4572256 4577553 + KAI3809838.1 Smso7g00258 258
7 4595593 4602815 - KAI3809840.1 Smso7g00260 260
26 48108133 48109930 + KAI3695572.1 Smso26g02087 2087
26 48124047 48125407 + KAI3695574.1 Smso26g02089 2089
29 4832685 4836157 + KAI3675291.1 Smso29g00297 297
29 4851603 4855276 - KAI3675292.1 Smso29g00298 298
29 4860328 4864755 + KAI3675293.1 Smso29g00299 299
29 4877025 4889809 - KAI3675295.1 Smso29g00301 301
5 34203365 34204553 + transfrag28617.t01 Soca5g03058 3058
5 34235852 34238825 + augustus42848.t01 Soca5g03059 3059
5 34269310 34273374 + transfrag28615.t01 Soca5g03060 3060
5 34295905 34301780 + augustus42843.t05 Soca5g03066 3066
5 34295905 34301780 + augustus42843.t03 Soca5g03068 3068
5 34302637 34310501 - transfrag28611.t01 Soca5g03070 3070
6 2705210 2712934 + Streb.6G001060.1 Stre6g00106 106
6 2713754 2717610 - Streb.6G001070.1 Stre6g00107 107
6 2764646 2769855 + Streb.6G001090.1 Stre6g00109 109
6 2770411 2774373 - Streb.6G001100.1 Stre6g00110 110
6 3025949 3026950 + Streb.6G001150.1 Stre6g00115 115
6 3059501 3062516 + Streb.6G001170.1 Stre6g00117 117
6 3086724 3087986 + Streb.6G001180.1 Stre6g00118 118
1 52147057 52148034 + >KAK1439915.1 Taer1g05740 5740
1 52189765 52193812 + >KAK1439920.1 Taer1g05745 5745
1 52194388 52202487 - >KAK1439921.1 Taer1g05746 5746
4 106449429 106450854 + TkA04G422450.1 Tako4g04583 4583
4 106473264 106474757 + TkA04G422500.1 Tako4g04585 4585
4 106531987 106533531 + TkA04G422690.2 Tako4g04590 4590
4 106842081 106845997 + TkA04G423800.1 Tako4g04610 4610
4 106977399 106988407 - TkA04G424220.7 Tako4g04623 4623
4 64909345 64909890 + TbA04G016010.1 Tamo4g03349 3349
4 64971496 64972434 + TbA04G015950.1 Tamo4g03353 3353
4 64989185 64990815 + TbA04G015910.1 Tamo4g03356 3356
4 65028785 65031762 + TbA04G015870.1 Tamo4g03358 3358
4 65043207 65047357 + TbA04G015850.1 Tamo4g03359 3359
       
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