AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00962 Sain12g00753 . Cati3g00999 Ccar2g01807 . . . . . . Pslu1g21797 Lomi1g00110 Lomi2g04549 . Ecan3g01873 Soca5g03016 . . . . . Chma7g09020 Chmo13g00276 . . Chla6g06642 Chna2g00177 Cind3g04226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00963 . Ceso2g01658 Cati3g01001 Ccar2g01806 . Cich4g04103 Lssa7g03054 Laca7g02494 Tako4g04527 . Pslu1g21799 Lomi1g00108 Lomi2g04551 Enbr6g02989 Ecan3g01871 Soca5g03018 Glco3g00405 Artr3g12561 Aary5g03053 . Aann4g01570 Chma7g09029 Chmo13g00281 . . Chla6g06655 Chna2g00169 Cind3g04231 Pdy4g00155 . . . . . . . . . . . . . . . . . . . . Cobi4g03273 Hean16g00918 Bial4g03584 . Dapi7g00158 Dapi23g00174 Hetu48g00826 Hetu46g00908 Hetu47g00911 Amtr01g04204 Smso7g00180 Smso29g00221 . . . . . . Stre6g00205 Mimi17g00194
Armi1g00964 . Ceso2g01659 Cati3g01003 Ccar2g01805 Cien5g03039 Cich4g04102 Lssa7g03053 Laca7g02493 . Tamo4g03290 Pslu1g21800 Lomi1g00107 Lomi2g04552 Enbr6g02986 Ecan3g01870 Soca5g03020 Glco3g00406 Artr3g12562 Aary5g03054 . Aann4g01571 Chma7g09031 Chmo13g00282 . . Chla6g06656 Chna2g00168 Cind3g00155 Pdy4g00154 . . . . . . . . . . . . . . . . . . . . Cobi4g03272 Hean16g00920 Bial4g03583 . Dapi7g00159 Dapi23g00175 Hetu48g00817 Hetu46g00905 Hetu47g00907 Amtr01g04203 Smso7g00179 Smso29g00220 Taer1g05652 Fro12g02506 Fso2g00207 Ftr4g03791 Fra11g02636 Fli1g00162 Stre6g00206 Mimi17g00195
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00966 Sain12g00757 . . Ccar2g01802 . . . . . . Pslu1g21801 Lomi1g00106 Lomi2g04553 . Ecan3g01869 Soca5g03021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00967 Sain12g00765 . . Ccar2g01801 . . . . . . Pslu1g21802 . Lomi2g04554 . Ecan3g01867 Soca5g03022 . . . . . Chma7g09046 Chmo13g00291 Chmo14g00354 . Chla6g06665 Chna2g00165 Cind3g04237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00970 Sain12g00768 . . Ccar2g01800 Cien5g03036 Cich4g04098 Lssa7g03050 Laca7g02487 Tako4g04533 Tamo4g03296 Pslu1g21805 Lomi1g00105 Lomi2g04555 . Ecan3g01866 Soca5g03023 Glco3g00414 . . . Aann4g01576 . . . . . . . Pdy4g00151 . . . . . . . . . . . . . . . . . . . . Cobi4g03267 Hean16g00922 Bial4g03580 . Dapi7g00161 Dapi23g00177 Hetu48g00815 Hetu46g00903 Hetu47g00899 Amtr01g04197 Smso7g00177 Smso29g00218 Taer1g05650 . Fso2g00205 . Fra11g02634 Fli1g00164 Stre6g00208 Mimi17g00198
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
First Page 70 of 3145 Last
Gene_GFF
Chromosome Start End Strand Old_gene Gene Num
4 75227395 75233956 + chr4g0789061 Aann4g01570 1570
4 75237196 75242694 + chr4g0789071 Aann4g01571 1571
4 75520142 75524323 - chr4g0789451 Aann4g01576 1576
5 186147186 186153203 + Aargg5g30530.1 Aary5g03053 3053
5 186216609 186223320 + Aargg5g30540.1 Aary5g03054 3054
1 112970180 112971473 + AtrifAMIRv0_Chr01g0041971 Amtr01g04197 4197
1 113074007 113077755 - AtrifAMIRv0_Chr01g0042031 Amtr01g04203 4203
1 113082758 113091341 - AtrifAMIRv0_Chr01g0042041 Amtr01g04204 4204
1 25954353 25955492 + AmiAMIRv0_Chr01g0009621 Armi1g00962 962
1 25972677 25977454 + AmiAMIRv0_Chr01g0009631 Armi1g00963 963
1 25978315 25981383 + AmiAMIRv0_Chr01g0009641 Armi1g00964 964
1 26041520 26041984 - AmiAMIRv0_Chr01g0009661 Armi1g00966 966
1 26180596 26181105 - AmiAMIRv0_Chr01g0009671 Armi1g00967 967
1 26191842 26192603 - AmiAMIRv0_Chr01g0009701 Armi1g00970 970
3 431521541 431526433 + AtridAMIRv0_Chr03g0432971 Artr3g12561 12561
3 431527631 431530003 + AtridAMIRv0_Chr03g0432981 Artr3g12562 12562
4 80981913 80983332 + g43419.t1 Bial4g03580 3580
4 81028071 81030453 - g43422.t1 Bial4g03583 3583
4 81033588 81037172 - g43423.t1 Bial4g03584 3584
3 13929592 13932095 + CtAH03T0071900.1 Cati3g00999 999
3 13938650 13944024 + CtAH03T0072000.2 Cati3g01001 1001
3 13944827 13947749 + CtAH03T0072100.1 Cati3g01003 1003
2 64095390 64096151 + gnl|WGS:LEKV|Ccrd_010846.mRNA.1_mrna Ccar2g01800 1800
2 64099215 64105913 + gnl|WGS:LEKV|Ccrd_010847.mRNA.1_mrna Ccar2g01801 1801
2 64121056 64121520 + gnl|WGS:LEKV|Ccrd_010848.mRNA.1_mrna Ccar2g01802 1802
2 64144632 64147962 - gnl|WGS:LEKV|Ccrd_010851.mRNA.1_mrna Ccar2g01805 1805
2 64149525 64154530 - gnl|WGS:LEKV|Ccrd_010852.mRNA.1_mrna Ccar2g01806 1806
2 64158473 64159615 - gnl|WGS:LEKV|Ccrd_010853.mRNA.1_mrna Ccar2g01807 1807
2 35817115 35821559 + >KAJ9561005.1 Ceso2g01658 1658
2 35822610 35824759 + >KAJ9561006.1 Ceso2g01659 1659
6 271723290 271724440 + ClaG1_Chr06g0438891 Chla6g06642 6642
6 272061369 272066030 + ClaG1_Chr06g0439021 Chla6g06655 6655
6 272068426 272071937 + ClaG1_Chr06g0439031 Chla6g06656 6656
6 272308236 272309130 - ClaG1_Chr06g0439121 Chla6g06665 6665
7 303890480 303891631 + CmaNakai_Chr07g0713221 Chma7g09020 9020
7 304048098 304052191 + CmaNakai_Chr07g0713311 Chma7g09029 9029
7 304240392 304243479 - CmaNakai_Chr07g0713331 Chma7g09031 9031
7 304524681 304528249 - CmaNakai_Chr07g0713481 Chma7g09046 9046
13 12158839 12160857 + evm.model.scaffold_1647.58 Chmo13g00276 276
13 12367169 12371832 + evm.model.scaffold_1647.50 Chmo13g00281 281
13 12378455 12382583 + evm.model.scaffold_1647.49 Chmo13g00282 282
13 12629189 12630113 - evm.model.scaffold_1647.34 Chmo13g00291 291
14 14781122 14782052 + evm.model.scaffold_124.154 Chmo14g00354 354
2 10478704 10479737 + Cn1268320 Chna2g00165 165
2 10820021 10823283 - Cn1268220 Chna2g00168 168
2 10825523 10829898 - Cn1268210 Chna2g00169 169
2 10952461 10953612 - Cn1268120 Chna2g00177 177
4 120339291 120340046 + KAI3753233.1 Cich4g04098 4098
4 120446208 120447581 - KAI3753237.1 Cich4g04102 4102
4 120448160 120453629 - KAI3753238.1 Cich4g04103 4103
5 72658557 72659405 + KAI3509556.1 Cien5g03036 3036
5 72729593 72730997 - KAI3509559.1 Cien5g03039 3039
3 36792736 36798288 - D.indicum_Contig1119_G00009.t1 Cind3g00155 155
3 364251864 364253015 + D.indicum_Contig50_G00042.t1 Cind3g04226 4226
3 364306349 364310889 + D.indicum_Contig50_G00047.t1 Cind3g04231 4231
3 364637557 364638060 - D.indicum_Contig50_G00053.t1 Cind3g04237 4237
4 82448816 82450076 + h2tg000064l_1.g27482.t1 Cobi4g03267 3267
4 82484550 82487642 - h2tg000064l_1.g27487.t1 Cobi4g03272 3272
4 82488849 82494160 - h2tg000064l_1.g27488.t1 Cobi4g03273 3273
7 3229169 3235765 + h1tg000136l.g124506.t1 Dapi7g00158 158
7 3236776 3239650 + h1tg000136l.g124505.t1 Dapi7g00159 159
7 3264228 3265619 - h1tg000136l.g124503.t1 Dapi7g00161 161
23 3739152 3745195 + h2tg000064l.g12512.t1 Dapi23g00174 174
23 3746270 3749145 + h2tg000064l.g12513.t1 Dapi23g00175 175
23 3758559 3760299 - h2tg000064l.g12515.t1 Dapi23g00177 177
3 29701244 29702312 + XM_043766708.1 Ecan3g01866 1866
3 29705135 29705620 + XM_043764099.1 Ecan3g01867 1867
3 29713721 29714209 + XM_043764102.1 Ecan3g01869 1869
3 29716330 29719412 - XM_043765927.1 Ecan3g01870 1870
3 29722018 29727361 - XM_043763583.1 Ecan3g01871 1871
3 29733323 29734680 - XM_043766828.1 Ecan3g01873 1873
6 109574024 109576973 - evm.model.ctg1961.10 Enbr6g02986 2986
6 109701221 109713738 - evm.model.ctg366.7 Enbr6g02989 2989
1 3255610 3256286 + FliAMIRv0_Chr01g0001571 Fli1g00162 162
1 3337621 3338909 - FliAMIRv0_Chr01g0001591 Fli1g00164 164
11 79851353 79852644 + FraAMIRv0_Chr11g0226561 Fra11g02634 2634
11 79865109 79867272 - FraAMIRv0_Chr11g0226581 Fra11g02636 2636
12 32858379 32861117 - FroAMIRv0_Chr12g0220541 Fro12g02506 2506
2 2877579 2879232 + FsoAMIRv0_Chr02g0030241 Fso2g00205 205
2 2897094 2899538 - FsoAMIRv0_Chr02g0030261 Fso2g00207 207
4 121839734 121841643 - FtrAMIRv0_Chr04g0132251 Ftr4g03791 3791
3 21871818 21875528 + GcoAMIRv0_Chr03g0160341 Glco3g00405 405
3 21892743 21897078 + GcoAMIRv0_Chr03g0160351 Glco3g00406 406
3 22404371 22405129 - GcoAMIRv0_Chr03g0160431 Glco3g00414 414
16 28644694 28658050 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0733271 Hean16g00918 918
16 28779658 28782933 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0733331 Hean16g00920 920
16 28934746 28936233 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr16g0733361 Hean16g00922 922
46 45323173 45324332 + >Htub.h1tg000086l.g508.t1 Hetu46g00903 903
46 45420048 45424865 - >Htub.h1tg000086l.g506.t1 Hetu46g00905 905
46 45501518 45504850 - >Htub.h1tg000086l.g503.t1 Hetu46g00908 908
47 49908030 49909210 + >Htub.h1tg003760l.g411.t1 Hetu47g00899 899
47 50026081 50031790 - >Htub.h1tg003760l.g403.t1 Hetu47g00907 907
47 50133130 50146134 - >Htub.h1tg003760l.g399.t1 Hetu47g00911 911
48 42454673 42455859 + >Htub.h1tg002973l.g339.t1 Hetu48g00815 815
48 42624263 42629254 - >Htub.h1tg002973l.g337.t1 Hetu48g00817 817
48 42747027 42760104 - >Htub.h1tg002973l.g328.t1 Hetu48g00826 826
7 118315355 118316110 + CAI9294662.1 Laca7g02487 2487
7 118638520 118640261 - CAI9294668.1 Laca7g02493 2493
7 118641088 118646306 - CAI9294669.1 Laca7g02494 2494
1 974199 974963 + LmiAMIRv0_Chr01g0001051 Lomi1g00105 105
1 978987 979439 + LmiAMIRv0_Chr01g0001061 Lomi1g00106 106
1 983753 985826 - LmiAMIRv0_Chr01g0001071 Lomi1g00107 107
1 986459 991400 - LmiAMIRv0_Chr01g0001081 Lomi1g00108 108
1 997781 998920 - LmiAMIRv0_Chr01g0001101 Lomi1g00110 110
2 50520724 50521863 + LmiAMIRv0_Chr02g0090821 Lomi2g04549 4549
2 50531151 50535223 + LmiAMIRv0_Chr02g0090841 Lomi2g04551 4551
2 50535845 50538073 + LmiAMIRv0_Chr02g0090851 Lomi2g04552 4552
2 50540486 50540944 - LmiAMIRv0_Chr02g0090861 Lomi2g04553 4553
2 50543324 50543818 - LmiAMIRv0_Chr02g0090871 Lomi2g04554 4554
2 50547530 50548291 - LmiAMIRv0_Chr02g0090881 Lomi2g04555 4555
7 161094292 161095047 + >KAJ0197941.1 Lssa7g03050 3050
7 161569879 161571616 - >KAJ0197493.1 Lssa7g03053 3053
7 161572518 161577246 - >KAJ0197060.1 Lssa7g03054 3054
17 5287847 5297283 + KAD3066516.1 Mimi17g00194 194
17 5315088 5319781 + KAD3066517.1 Mimi17g00195 195
17 5347599 5349018 - KAD3066520.1 Mimi17g00198 198
4 2393958 2394713 + PdyAMIRv0_Chr04g0149591 Pdy4g00151 151
4 2441622 2444562 - PdyAMIRv0_Chr04g0149621 Pdy4g00154 154
4 2448242 2457381 - PdyAMIRv0_Chr04g0149631 Pdy4g00155 155
1 156567923 156569062 + PluAMIRv0_Chr01g0217011 Pslu1g21797 21797
1 156577205 156581679 + PluAMIRv0_Chr01g0217031 Pslu1g21799 21799
1 156582309 156584500 + PluAMIRv0_Chr01g0217041 Pslu1g21800 21800
1 156586296 156586766 - PluAMIRv0_Chr01g0217051 Pslu1g21801 21801
1 156592148 156592639 - PluAMIRv0_Chr01g0217061 Pslu1g21802 21802
1 156613279 156614040 - PluAMIRv0_Chr01g0217091 Pslu1g21805 21805
12 18127052 18128191 - SinAMIRv0_Chr12g0363171 Sain12g00753 753
12 18247082 18247546 - SinAMIRv0_Chr12g0363211 Sain12g00757 757
12 18610782 18611330 - SinAMIRv0_Chr12g0363291 Sain12g00765 765
12 18663228 18663986 - SinAMIRv0_Chr12g0363321 Sain12g00768 768
7 3121563 3122855 + KAI3809757.1 Smso7g00177 177
7 3145736 3147918 - KAI3809759.1 Smso7g00179 179
7 3150184 3159935 - KAI3809760.1 Smso7g00180 180
29 3498520 3499817 + KAI3675212.1 Smso29g00218 218
29 3551470 3554536 - KAI3675214.1 Smso29g00220 220
29 3555937 3566001 - KAI3675215.1 Smso29g00221 221
5 33672428 33674200 + transfrag28651.t01 Soca5g03016 3016
5 33683857 33689347 + asmbl_5061.p1 Soca5g03018 3018
5 33691651 33695491 + augustus42890.t01 Soca5g03020 3020
5 33702696 33703495 - transfrag28646.t01 Soca5g03021 3021
5 33722560 33723219 - transfrag28645.t01 Soca5g03022 3022
5 33724498 33725426 - transfrag28644.t01 Soca5g03023 3023
6 5352759 5361051 + Streb.6G002050.1 Stre6g00205 205
6 5427189 5430358 + Streb.6G002060.1 Stre6g00206 206
6 5474826 5476346 - Streb.6G002080.1 Stre6g00208 208
1 51426436 51427714 + >KAK1439828.1 Taer1g05650 5650
1 51436813 51438764 - >KAK1439830.1 Taer1g05652 5652
4 104765344 104772971 + TkA04G415970.3 Tako4g04527 4527
4 105078217 105078972 - TkA04G417320.1 Tako4g04533 4533
4 63891555 63892915 + TbA04G017360.1 Tamo4g03290 3290
4 64100606 64101361 - TbA04G017090.1 Tamo4g03296 3296
       
DecoBrowse