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AGRP

Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi1g00498 Sain12g00449 Ceso2g01369 Cati3g00559 Ccar2g01991 Cien5g03188 Cich4g04470 Lssa7g03442 Laca7g02785 Tako4g03988 Tamo4g02899 . Lomi1g00286 . Enbr6g00829 Ecan3g02139 . Glco3g01089 . Aary5g02815 Aary13g03289 Aann4g01156 Chma7g08147 . . . . Chna2g00609 . Pdy4g00498 . Hean15g03909 . . . . . . . Amtr02g04065 . Smso13g00203 . . . . . . Stre9g01608 Mimi9g01332 Cobi4g03128 Hean11g00764 . Bial16g02808 Dapi7g00295 Dapi23g00321 . . . . Smso7g00065 Smso29g00070 . . . . . . Stre6g00394 Mimi17g00041
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00504 Sain12g00452 Ceso2g01372 Cati3g00562 . . . . . . . Pslu1g21394 . Lomi2g04369 Enbr6g00830 Ecan3g02138 Soca5g02521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. Sain12g00457 Ceso2g01375 Cati3g00565 Ccar2g01989 . Cich4g04462 Lssa7g03437 Laca7g02782 . Tamo4g02903 . . . . Ecan3g02136 Soca5g02523 . . . . . . . . . . . . Pdy4g00493 . . . . . . . . . . . . . . . . . . . . Cobi4g03130 Hean11g00744 . Bial16g02810 Dapi7g00289 Dapi23g00317 Hetu32g00611 Hetu31g00564 Hetu33g00710 . Smso7g00067 Smso29g00073 Taer1g05521 Fro12g02392 Fso2g00239 Ftr4g03688 Fra11g02531 Fli1g00276 Stre6g00386 Mimi17g00043
Armi1g00506 Sain12g00458 Ceso2g01376 Cati3g00567 Ccar2g01988 Cien5g03186 Cich4g04461 Lssa7g03435 Laca7g02781 . Tamo4g02904 Pslu1g21407 Lomi1g00285 Lomi2g04373 . Ecan3g02135 Soca5g02524 Glco3g01084 . Aary5g02817 Aary13g03290 Aann4g01157 Chma7g08150 Chmo13g00755 . Chmo15g00630 . Chna2g00608 . Pdy4g00491 . . . . . . . . . . . . . . . . . . . . Cobi4g03131 Hean11g00743 Bial4g03414 Bial16g02811 Dapi7g00288 Dapi23g00316 Hetu32g00610 Hetu31g00563 Hetu33g00709 . Smso7g00069 Smso29g00074 Taer1g05522 Fro12g02393 Fso2g00238 Ftr4g03689 Fra11g02532 Fli1g00275 Stre6g00385 Mimi17g00044
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi1g00507 Sain12g00459 . Cati3g00568 Ccar2g01987 Cien5g03185 Cich4g04458 Lssa7g03431 . . . Pslu1g21412 . . . Ecan3g02133 Soca5g02525 . . Aary5g02818 . Aann4g01158 Chma7g08156 Chmo13g00754 . Chmo15g00629 . Chna2g00607 . Pdy4g00490 . Hean15g03899 Bial24g02233 Bial12g02376 . . Hetu17g02545 Hetu16g02658 Hetu18g02820 Amtr02g04062 . . . . . . . . Stre9g01613 Mimi9g01335 Cobi4g03132 Hean11g00741 Bial4g03415 Bial16g02812 Dapi7g00287 Dapi23g00315 . Hetu31g00562 Hetu33g00708 . Smso7g00070 Smso29g00078 Taer1g05524 Fro12g02395 Fso2g00237 Ftr4g03691 Fra11g02533 Fli1g00270 Stre6g00383 Mimi17g00400
Armi1g00508 Sain12g00461 Ceso2g01377 Cati3g00569 Ccar2g01986 . Cich4g04457 Lssa7g03429 Laca7g02776 . Tamo4g02910 Pslu1g21413 Lomi1g00283 Lomi2g04374 . Ecan3g02132 Soca5g02527 Glco3g01082 . Aary5g02819 Aary13g03292 Aann4g01161 Chma7g08157 Chmo13g00752 . Chmo15g00627 . Chna2g00606 . Pdy4g00489 . Hean15g03897 Bial24g02234 Bial12g02377 . . . Hetu16g02659 . Amtr02g04059 . . . . . . . . . . Cobi4g03133 Hean11g00740 Bial4g03417 Bial16g02813 Dapi7g00286 Dapi23g00314 Hetu32g00609 Hetu31g00561 Hetu33g00707 . Smso7g00071 Smso29g00079 Taer1g05525 Fro12g02396 Fso2g00236 Ftr4g03693 Fra11g02534 Fli1g00269 Stre6g00382 Mimi17g00394
Armi1g00515 Sain12g00462 . Cati3g00571 Ccar2g01985 Cien5g03181 Cich4g04454 Lssa7g03424 Laca7g02773 Tako4g04002 Tamo4g02920 Pslu1g21415 Lomi1g00282 Lomi2g04375 Enbr6g01746 Ecan3g02130 Soca5g02530 Glco3g01079 . Aary5g02820 Aary13g03293 Aann4g01165 . Chmo13g00751 . Chmo15g00622 . Chna2g00604 . Pdy4g00487 . Hean15g03894 Bial24g02235 Bial12g02378 . . Hetu17g02555 Hetu16g02661 . Amtr02g04054 . Smso13g00180 . . . . . . Stre9g01614 . Cobi4g03136 Hean11g00735 Bial4g03418 Bial16g02814 Dapi7g00285 Dapi23g00310 Hetu32g00608 Hetu31g00559 Hetu33g00706 Amtr02g07036 Smso7g00075 Smso29g00080 Taer1g05526 Fro12g02397 Fso2g00235 Ftr4g03694 Fra11g02535 Fli1g00265 Stre6g00380 Mimi17g00392
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
4 61625657 61630455 + chr4g0776941 Aann4g01156 1156
4 61728480 61734468 - chr4g0777011 Aann4g01157 1157
4 61767659 61769695 - chr4g0777041 Aann4g01158 1158
4 61811986 61816947 - chr4g0777071 Aann4g01161 1161
4 62125757 62131214 + chr4g0777271 Aann4g01165 1165
5 168414233 168416366 + Aargg5g28150.1 Aary5g02815 2815
5 169003677 169008184 - Aargg5g28170.1 Aary5g02817 2817
5 169420643 169420924 - Aargg5g28180.1 Aary5g02818 2818
5 169493816 169497992 - Aargg5g28190.1 Aary5g02819 2819
5 169949756 169951878 - Aargg5g28200.1 Aary5g02820 2820
13 195525849 195527981 + Aargg13g32890.1 Aary13g03289 3289
13 195818483 195823196 - Aargg13g32900.1 Aary13g03290 3290
13 196359109 196364159 - Aargg13g32920.1 Aary13g03292 3292
13 196576327 196578576 + Aargg13g32930.1 Aary13g03293 3293
2 80861551 80863344 - AtrifAMIRv0_Chr02g0136501 Amtr02g04054 4054
2 80952954 80956800 + AtrifAMIRv0_Chr02g0136551 Amtr02g04059 4059
2 80993337 80993648 + AtrifAMIRv0_Chr02g0136581 Amtr02g04062 4062
2 81052992 81056819 - AtrifAMIRv0_Chr02g0136611 Amtr02g04065 4065
2 128883413 128885283 - AtrifAMIRv0_Chr02g0166321 Amtr02g07036 7036
1 10136062 10137933 - AmiAMIRv0_Chr01g0004981 Armi1g00498 498
1 10344168 10346066 + AmiAMIRv0_Chr01g0005041 Armi1g00504 504
1 10425465 10430385 - AmiAMIRv0_Chr01g0005061 Armi1g00506 506
1 10449541 10449804 - AmiAMIRv0_Chr01g0005071 Armi1g00507 507
1 10479132 10486059 - AmiAMIRv0_Chr01g0005081 Armi1g00508 508
1 10648651 10650426 + AmiAMIRv0_Chr01g0005151 Armi1g00515 515
4 77872381 77876814 - g43253.t1 Bial4g03414 3414
4 77889844 77890164 - g43254.t1 Bial4g03415 3415
4 77908760 77913012 - g43256.t1 Bial4g03417 3417
4 77995515 77997335 + g43257.t1 Bial4g03418 3418
12 54095415 54095714 - g35575.t1 Bial12g02376 2376
12 54107587 54111660 - g35576.t1 Bial12g02377 2377
12 54130540 54132366 + g35577.t1 Bial12g02378 2378
16 72049162 72051300 + g127392.t1 Bial16g02808 2808
16 72158720 72159544 + g127390.t1 Bial16g02810 2810
16 72161834 72164676 - g127389.t1 Bial16g02811 2811
16 72177573 72177896 - g127388.t1 Bial16g02812 2812
16 72200217 72204034 - g127387.t1 Bial16g02813 2813
16 72267776 72269575 + g127386.t1 Bial16g02814 2814
24 52967261 52967584 - g67899.t1 Bial24g02233 2233
24 52991689 52992794 - g67900.t1 Bial24g02234 2234
24 53008440 53010266 + g67901.t1 Bial24g02235 2235
3 5605151 5608889 + CtAH03T0038900.1 Cati3g00559 559
3 5664486 5667130 - CtAH03T0039200.1 Cati3g00562 562
3 5723842 5724234 + CtAH03T0039500.1 Cati3g00565 565
3 5725061 5730742 - CtAH03T0039600.2 Cati3g00567 567
3 5748941 5749228 - CtAH03T0039700.1 Cati3g00568 568
3 5760394 5772918 - CtAH03T0039800.1 Cati3g00569 569
3 5843101 5844852 + CtAH03T0040000.1 Cati3g00571 571
2 66634996 66636795 - gnl|WGS:LEKV|Ccrd_011032.mRNA.1_mrna Ccar2g01985 1985
2 66676744 66685083 + gnl|WGS:LEKV|Ccrd_011033.mRNA.1_mrna Ccar2g01986 1986
2 66691029 66691322 + gnl|WGS:LEKV|Ccrd_011034.mRNA.1_mrna Ccar2g01987 1987
2 66702297 66708628 + gnl|WGS:LEKV|Ccrd_011035.mRNA.1_mrna Ccar2g01988 1988
2 66707125 66708788 - gnl|WGS:LEKV|Ccrd_011036.mRNA.1_mrna Ccar2g01989 1989
2 66739251 66741107 - gnl|WGS:LEKV|Ccrd_011038.mRNA.1_mrna Ccar2g01991 1991
2 27752357 27757204 + >KAJ9560931.1 Ceso2g01369 1369
2 27914846 27918630 + >KAJ9560709.1 Ceso2g01372 1372
2 27996406 27998113 + >KAJ9560682.1 Ceso2g01375 1375
2 27999798 28005287 - >KAJ9560684.1 Ceso2g01376 1376
2 28025527 28033977 - >KAJ9560685.1 Ceso2g01377 1377
7 277885057 277886937 + CmaNakai_Chr07g0704491 Chma7g08147 8147
7 278096440 278102815 - CmaNakai_Chr07g0704521 Chma7g08150 8150
7 278384457 278384738 + CmaNakai_Chr07g0704581 Chma7g08156 8156
7 278518533 278522371 - CmaNakai_Chr07g0704591 Chma7g08157 8157
13 35756047 35758225 - evm.model.scaffold_597.135 Chmo13g00751 751
13 36193191 36197123 + evm.model.scaffold_461.11 Chmo13g00752 752
13 36355920 36356620 + evm.model.scaffold_461.22 Chmo13g00754 754
13 36496715 36500853 + evm.model.scaffold_461.28 Chmo13g00755 755
15 32928172 32930344 - evm.model.scaffold_1740.172 Chmo15g00622 622
15 33427554 33432238 + evm.model.scaffold_126.170 Chmo15g00627 627
15 33510847 33511125 + evm.model.scaffold_126.166 Chmo15g00629 629
15 33579627 33583681 + evm.model.scaffold_126.162 Chmo15g00630 630
2 41396153 41397958 - Cn0067620 Chna2g00604 604
2 41651582 41656080 + Cn0067540 Chna2g00606 606
2 41714528 41714806 + Cn0067520 Chna2g00607 607
2 41871377 41875742 + Cn0067500 Chna2g00608 608
2 42062996 42064876 - Cn0067440 Chna2g00609 609
4 130155387 130157192 - KAI3753589.1 Cich4g04454 4454
4 130329616 130332745 + KAI3753592.1 Cich4g04457 4457
4 130371167 130371445 + KAI3753593.1 Cich4g04458 4458
4 130422255 130424202 + KAI3753596.1 Cich4g04461 4461
4 130440572 130441113 - KAI3753597.1 Cich4g04462 4462
4 130614095 130615918 - KAI3753605.1 Cich4g04470 4470
5 76832331 76834136 - KAI3509701.1 Cien5g03181 3181
5 76973873 76974151 + KAI3509705.1 Cien5g03185 3185
5 77010986 77013129 + KAI3509706.1 Cien5g03186 3186
5 77159262 77161100 - KAI3509708.1 Cien5g03188 3188
4 80740399 80742213 + h2tg000009l_1.g42151.t1 Cobi4g03128 3128
4 80790851 80792638 + h2tg000009l_1.g42149.t1 Cobi4g03130 3130
4 80794805 80799398 - h2tg000009l_1.g42148.t1 Cobi4g03131 3131
4 80817778 80818080 - h2tg000009l_1.g42147.t1 Cobi4g03132 3132
4 80827740 80831672 - h2tg000009l_1.g42146.t1 Cobi4g03133 3133
4 80890698 80892506 + h2tg000009l_1.g42143.t1 Cobi4g03136 3136
7 5662089 5663912 - h1tg000030l.g76875.t1 Dapi7g00285 285
7 5826085 5828986 + h1tg000030l.g76876.t1 Dapi7g00286 286
7 5838473 5838796 + h1tg000030l.g76877.t1 Dapi7g00287 287
7 5859575 5863347 + h1tg000030l.g76878.t1 Dapi7g00288 288
7 5863563 5864646 - h1tg000030l.g76879.t1 Dapi7g00289 289
7 6075231 6077951 - h1tg000030l.g76885.t1 Dapi7g00295 295
23 6292845 6294659 - h2tg000284l.g80735.t1 Dapi23g00310 310
23 6471340 6474463 + h2tg000284l.g80731.t1 Dapi23g00314 314
23 6482552 6482875 + h2tg000284l.g80730.t1 Dapi23g00315 315
23 6491906 6495735 + h2tg000284l.g80729.t1 Dapi23g00316 316
23 6495947 6497004 - h2tg000284l.g80728.t1 Dapi23g00317 317
23 6730337 6733042 - h2tg000284l.g80724.t1 Dapi23g00321 321
3 32092740 32094977 - XM_043765544.1 Ecan3g02130 2130
3 32145044 32149725 + XM_043763590.1 Ecan3g02132 2132
3 32159919 32160209 + XM_043764153.1 Ecan3g02133 2133
3 32194249 32198665 + XM_043766156.1 Ecan3g02135 2135
3 32204739 32205807 + XM_043763404.1 Ecan3g02136 2136
3 32226273 32228309 - XM_043766020.1 Ecan3g02138 2138
3 32232266 32234262 - XM_043764717.1 Ecan3g02139 2139
6 30027368 30029245 + evm.model.ctg5963.2 Enbr6g00829 829
6 30056078 30057885 + evm.model.ctg5963.6 Enbr6g00830 830
6 61630204 61631996 + evm.model.ctg696.1 Enbr6g01746 1746
1 5323163 5324992 - FliAMIRv0_Chr01g0002601 Fli1g00265 265
1 5467859 5471412 + FliAMIRv0_Chr01g0002641 Fli1g00269 269
1 5481443 5481757 + FliAMIRv0_Chr01g0002651 Fli1g00270 270
1 5528144 5531753 + FliAMIRv0_Chr01g0002701 Fli1g00275 275
1 5532327 5534037 - FliAMIRv0_Chr01g0002711 Fli1g00276 276
11 78931079 78931834 + FraAMIRv0_Chr11g0225531 Fra11g02531 2531
11 78932449 78935922 - FraAMIRv0_Chr11g0225541 Fra11g02532 2532
11 78947975 78948286 - FraAMIRv0_Chr11g0225551 Fra11g02533 2533
11 78956443 78959967 - FraAMIRv0_Chr11g0225561 Fra11g02534 2534
11 79015234 79017060 + FraAMIRv0_Chr11g0225571 Fra11g02535 2535
12 31692369 31693214 + FroAMIRv0_Chr12g0219401 Fro12g02392 2392
12 31693620 31697034 - FroAMIRv0_Chr12g0219411 Fro12g02393 2393
12 31712724 31713035 - FroAMIRv0_Chr12g0219431 Fro12g02395 2395
12 31730401 31733781 - FroAMIRv0_Chr12g0219441 Fro12g02396 2396
12 31804454 31804828 + FroAMIRv0_Chr12g0219451 Fro12g02397 2397
2 3220757 3222592 - FsoAMIRv0_Chr02g0030541 Fso2g00235 235
2 3293235 3296671 + FsoAMIRv0_Chr02g0030551 Fso2g00236 236
2 3307227 3307547 + FsoAMIRv0_Chr02g0030561 Fso2g00237 237
2 3320985 3324447 + FsoAMIRv0_Chr02g0030571 Fso2g00238 238
2 3325116 3326895 - FsoAMIRv0_Chr02g0030581 Fso2g00239 239
4 120725749 120727960 + FtrAMIRv0_Chr04g0131221 Ftr4g03688 3688
4 120728499 120731828 - FtrAMIRv0_Chr04g0131231 Ftr4g03689 3689
4 120749229 120749546 - FtrAMIRv0_Chr04g0131251 Ftr4g03691 3691
4 120768886 120771200 - FtrAMIRv0_Chr04g0131271 Ftr4g03693 3693
4 120832182 120833213 + FtrAMIRv0_Chr04g0131281 Ftr4g03694 3694
3 64532962 64534767 - GcoAMIRv0_Chr03g0167081 Glco3g01079 1079
3 64977377 64981387 + GcoAMIRv0_Chr03g0167111 Glco3g01082 1082
3 65148111 65152561 + GcoAMIRv0_Chr03g0167131 Glco3g01084 1084
3 65768249 65770123 + GcoAMIRv0_Chr03g0167181 Glco3g01089 1089
11 15867810 15869899 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0474461 Hean11g00735 735
11 16196630 16201962 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0474521 Hean11g00740 740
11 16235416 16235739 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0474541 Hean11g00741 741
11 16371639 16377446 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0474611 Hean11g00743 743
11 16377617 16380040 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0474621 Hean11g00744 744
11 17170838 17172944 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0474851 Hean11g00764 764
15 148057962 148059746 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716011 Hean15g03894 3894
15 148262798 148269017 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716041 Hean15g03897 3897
15 148393414 148393716 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716061 Hean15g03899 3899
15 148529006 148531364 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0716161 Hean15g03909 3909
16 142615698 142618608 - >Htub.h1tg002434l.g122.t1 Hetu16g02658 2658
16 142899891 142905304 - >Htub.h1tg002434l.g121.t1 Hetu16g02659 2659
16 143421174 143422958 + >Htub.h1tg002434l.g119.t1 Hetu16g02661 2661
17 134834413 134834706 - >Htub.h1tg000886l.g429.t1 Hetu17g02545 2545
17 135738512 135740296 + >Htub.h1tg000886l.g419.t1 Hetu17g02555 2555
18 142655082 142655375 - >Htub.h1tg004268l.g299.t1 Hetu18g02820 2820
31 20597111 20599021 - >Htub.h1tg001429l.g304.t1 Hetu31g00559 559
31 20870748 20874310 + >Htub.h1tg001429l.g302.t1 Hetu31g00561 561
31 20889257 20889562 + >Htub.h1tg001429l.g301.t1 Hetu31g00562 562
31 20932483 20936168 + >Htub.h1tg001429l.g300.t1 Hetu31g00563 563
31 20950947 20952854 - >Htub.h1tg001429l.g299.t1 Hetu31g00564 564
32 24730391 24732307 - >Htub.h1tg001952l.g157.t1 Hetu32g00608 608
32 25017608 25021460 + >Htub.h1tg002251l.g283.t1 Hetu32g00609 609
32 25158485 25162260 + >Htub.h1tg002251l.g282.t1 Hetu32g00610 610
32 25164876 25166602 - >Htub.h1tg002251l.g281.t1 Hetu32g00611 611
33 25344112 25346016 - >Htub.h1tg000986l.g367.t1 Hetu33g00706 706
33 25715798 25719658 + >Htub.h1tg001292l.g295.t1 Hetu33g00707 707
33 25730737 25731048 + >Htub.h1tg001292l.g296.t1 Hetu33g00708 708
33 25862940 25866658 + >Htub.h1tg001292l.g297.t1 Hetu33g00709 709
33 25875530 25877431 - >Htub.h1tg001292l.g298.t1 Hetu33g00710 710
7 132677757 132679580 - CAI9294961.1 Laca7g02773 2773
7 133396153 133398696 - CAI9294964.1 Laca7g02776 2776
7 133632945 133637111 + CAI9294969.1 Laca7g02781 2781
7 133686001 133686738 + CAI9294970.1 Laca7g02782 2782
7 133784883 133785956 - CAI9294973.1 Laca7g02785 2785
1 2381416 2383212 - LmiAMIRv0_Chr01g0002821 Lomi1g00282 282
1 2404502 2407668 + LmiAMIRv0_Chr01g0002831 Lomi1g00283 283
1 2436144 2439553 + LmiAMIRv0_Chr01g0002851 Lomi1g00285 285
1 2440034 2441926 - LmiAMIRv0_Chr01g0002861 Lomi1g00286 286
2 49045002 49046843 + LmiAMIRv0_Chr02g0089021 Lomi2g04369 4369
2 49075654 49079112 - LmiAMIRv0_Chr02g0089061 Lomi2g04373 4373
2 49092290 49095595 - LmiAMIRv0_Chr02g0089071 Lomi2g04374 4374
2 49128355 49130151 + LmiAMIRv0_Chr02g0089081 Lomi2g04375 4375
7 180336698 180338512 - >KAJ0198075.1 Lssa7g03424 3424
7 180983489 180987058 + >KAJ0196638.1 Lssa7g03429 3429
7 181162424 181162714 + >KAJ0195136.1 Lssa7g03431 3431
7 181335202 181338418 + >KAJ0197216.1 Lssa7g03435 3435
7 181512939 181513596 + >KAJ0197440.1 Lssa7g03437 3437
7 181990547 181992376 - >KAJ0198339.1 Lssa7g03442 3442
9 38037291 38039187 + KAD5318067.1 Mimi9g01332 1332
9 38356995 38359504 - KAD5318070.1 Mimi9g01335 1335
17 1683496 1686662 + KAD3066363.1 Mimi17g00041 41
17 1784837 1785994 + KAD3066365.1 Mimi17g00043 43
17 1790315 1797496 - KAD3066366.1 Mimi17g00044 44
17 12783147 12784961 - KAD3066714.1 Mimi17g00392 392
17 13115387 13122488 + KAD3066716.1 Mimi17g00394 394
17 13235236 13235556 + KAD3066722.1 Mimi17g00400 400
4 9030184 9031992 - PdyAMIRv0_Chr04g0152951 Pdy4g00487 487
4 9132788 9137861 + PdyAMIRv0_Chr04g0152971 Pdy4g00489 489
4 9149088 9149390 + PdyAMIRv0_Chr04g0152981 Pdy4g00490 490
4 9176536 9181265 + PdyAMIRv0_Chr04g0152991 Pdy4g00491 491
4 9181977 9185594 - PdyAMIRv0_Chr04g0153002 Pdy4g00493 493
4 9267915 9269753 - PdyAMIRv0_Chr04g0153051 Pdy4g00498 498
1 153678021 153679871 + PluAMIRv0_Chr01g0213001 Pslu1g21394 21394
1 153753943 153757274 - PluAMIRv0_Chr01g0213131 Pslu1g21407 21407
1 153791736 153792029 - PluAMIRv0_Chr01g0213181 Pslu1g21412 21412
1 153797410 153801002 - PluAMIRv0_Chr01g0213191 Pslu1g21413 21413
1 153844158 153845951 + PluAMIRv0_Chr01g0213211 Pslu1g21415 21415
12 9611558 9614181 + SinAMIRv0_Chr12g0360131 Sain12g00449 449
12 9715409 9718010 + SinAMIRv0_Chr12g0360161 Sain12g00452 452
12 9903944 9904918 + SinAMIRv0_Chr12g0360211 Sain12g00457 457
12 9906659 9909694 - SinAMIRv0_Chr12g0360221 Sain12g00458 458
12 9950521 9950802 - SinAMIRv0_Chr12g0360231 Sain12g00459 459
12 10004266 10007786 - SinAMIRv0_Chr12g0360251 Sain12g00461 461
12 10171395 10173173 + SinAMIRv0_Chr12g0360261 Sain12g00462 462
7 1212305 1218593 + KAI3809645.1 Smso7g00065 65
7 1352157 1353697 + KAI3809647.1 Smso7g00067 67
7 1366543 1370423 - KAI3809649.1 Smso7g00069 69
7 1443896 1444192 - KAI3809650.1 Smso7g00070 70
7 1446450 1450930 - KAI3809651.1 Smso7g00071 71
7 1565344 1567122 + KAI3809655.1 Smso7g00075 75
13 12138897 12140699 + KAI3786437.1 Smso13g00180 180
13 14090475 14092374 - KAI3786460.1 Smso13g00203 203
29 1441681 1444162 + KAI3675064.1 Smso29g00070 70
29 1485756 1487431 + KAI3675067.1 Smso29g00073 73
29 1487955 1492102 - KAI3675068.1 Smso29g00074 74
29 1524058 1524363 - KAI3675072.1 Smso29g00078 78
29 1581111 1586828 - KAI3675073.1 Smso29g00079 79
29 1669178 1670953 + KAI3675074.1 Smso29g00080 80
5 27339262 27341230 + augustus16777.t01 Soca5g02521 2521
5 27351651 27352334 - augustus16778.t02 Soca5g02523 2523
5 27357114 27361895 - asmbl_1932.p1 Soca5g02524 2524
5 27394244 27394534 - genewise14400.t01 Soca5g02525 2525
5 27414765 27419489 - transfrag11155.t01 Soca5g02527 2527
5 27488654 27490983 + asmbl_2004.p1 Soca5g02530 2530
6 10129204 10131372 - Streb.6G003800.1 Stre6g00380 380
6 10236663 10240316 + Streb.6G003820.1 Stre6g00382 382
6 10247596 10248210 + Streb.6G003830.1 Stre6g00383 383
6 10283784 10286871 + Streb.6G003850.1 Stre6g00385 385
6 10288173 10288943 - Streb.6G003860.1 Stre6g00386 386
6 10580416 10583464 - Streb.6G003940.1 Stre6g00394 394
9 28297817 28299616 - Streb.9G016080.1 Stre9g01608 1608
9 28417823 28418904 - Streb.9G016130.1 Stre9g01613 1613
9 28449046 28451171 + Streb.9G016140.1 Stre9g01614 1614
1 50443407 50445160 + >KAK1439701.1 Taer1g05521 5521
1 50446027 50449074 - >KAK1439702.1 Taer1g05522 5522
1 50466954 50467274 - >KAK1439704.1 Taer1g05524 5524
1 50473541 50476576 - >KAK1439705.1 Taer1g05525 5525
1 50518929 50520719 + >KAK1439706.1 Taer1g05526 5526
4 89816274 89818115 + TkA04G356020.1 Tako4g03988 3988
4 90008595 90010421 + TkA04G357040.1 Tako4g04002 4002
4 55160551 55161847 + TbA04G028180.1 Tamo4g02899 2899
4 55307028 55307746 + TbA04G028100.1 Tamo4g02903 2903
4 55313785 55315675 - TbA04G028090.1 Tamo4g02904 2904
4 55436911 55440201 - TbA04G027920.1 Tamo4g02910 2910
4 55800356 55802188 + TbA04G027430.1 Tamo4g02920 2920
       
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